Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05314 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTATCAACAGAGCATACAAGAGAAGATGCAGTTAAACAACAATCCTTGATACTTGGCCACCTCCATACTTCAAATTCTCATTCTTCAACTACAACAAATAACAGCAATGGGTCAAACTCAAATTCACAAACCCCTCCTCCACCTGCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACACTTTTAGCGACAAATCGATTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACCAGCACACAAATTCGAAAACGGGTTTATGTTTGTCCAGAACCTTCTTGTGTCCACCATAACCCAACAAGAGCACTGGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCATTCAAAAATTTGTGGTACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTGGCAGAGGAGAACAACAAAGTGAATGTAGGAGCAAATTGCCAACCAATTATCCCAAACCCATTACCAACAATGAATAATAATAACCATTCCAATGAAAAGCAGCCATTATTACCACTCTCTCATGACCTCATGATGACATTAATGCCTACAACGGCAGCAAAACCATTTAGCAACAACAATTCTCCCTCCCTTCAACTGAGTTCAAACAGAGGCTCACCTCATGATCAATATCACATGTCAGCCACAGCATTGCTTCAAAAAGCTGCACAAATGGGACCAATAGTGAGTAGTGAAAAAAGTTTTGTCACAAGCATGGCAACAATGGCACCACCATCATTCAGTACTAATGAGGCACAACTACAATCATCTGTAATCATGAGCCAGCAGTATGGTAGTCAACTACAGGACATTCCTAATTGTGATCAGTATAATTTCAGTGGCAATAATATTGGAATGAGTGGTTTGGATATGTTCAATGCTATATTGGATCAGAGTAAGGCCTTATCGAAGATCATAGATCAGCAGAATAGAAGCAGTGTTATGTGTCCAACAATTAATGTTAAAGGAAGTGAGGATGTGATGACTTTGGACTTGCTGGGGATAGGAGTAGGAGTAGGAGGACATGGCAATTTGTGTGGTGGAATCCAACAACAGTCAGAAACGGCTGCAAGAGATGATGAGATTTGGAGAAAGTACTGGTCAAACAAGAATAATATTGCAGGCTTTGAATCATTTTCAGCAACAAGTAGCTAG 1404 0.4117 MSNITSCDSGSLSTEHTREDAVKQQSLILGHLHTSNSHSSTTTNNSNGSNSNSQTPPPPAKKKRSLPGNPDPSAEVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTQIRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNVGANCQPIIPNPLPTMNNNNHSNEKQPLLPLSHDLMMTLMPTTAAKPFSNNNSPSLQLSSNRGSPHDQYHMSATALLQKAAQMGPIVSSEKSFVTSMATMAPPSFSTNEAQLQSSVIMSQQYGSQLQDIPNCDQYNFSGNNIGMSGLDMFNAILDQSKALSKIIDQQNRSSVMCPTINVKGSEDVMTLDLLGIGVGVGGHGNLCGGIQQQSETAARDDEIWRKYWSNKNNIAGFESFSATSS. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05314 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Seca2g05314 467 MobiDBLite consensus disorder prediction 1 74 - -
Seca2g05314 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 433 IPR031140 -
Seca2g05314 467 SMART c2h2final6 131 161 IPR013087 -
Seca2g05314 467 SMART c2h2final6 166 186 IPR013087 -
Seca2g05314 467 SMART c2h2final6 90 112 IPR013087 -
Seca2g05314 467 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Seca2g05314 467 Gene3D Classic Zinc Finger 69 135 - -
Seca2g05314 467 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Seca2g05314 467 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Seca2g05314 467 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Seca2g05314 467 MobiDBLite consensus disorder prediction 28 59 - -
Seca2g05314 467 MobiDBLite consensus disorder prediction 271 292 - -
Seca2g05314 467 Gene3D Classic Zinc Finger 144 224 - -
Seca2g05314 467 FunFam protein indeterminate-domain 12-like 69 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05314 Seca-Chr2 139649999 139653948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05314 49 223 IDZ Gene Family AT3G50700 81.921 4.19e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g05314 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05314 - - gmx:100785295 534.258