LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05314	ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTATCAACAGAGCATACAAGAGAAGATGCAGTTAAACAACAATCCTTGATACTTGGCCACCTCCATACTTCAAATTCTCATTCTTCAACTACAACAAATAACAGCAATGGGTCAAACTCAAATTCACAAACCCCTCCTCCACCTGCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACACTTTTAGCGACAAATCGATTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAATTGCACCGGCGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGAACCAGCACACAAATTCGAAAACGGGTTTATGTTTGTCCAGAACCTTCTTGTGTCCACCATAACCCAACAAGAGCACTGGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTCCAATCTGACTGGAAAGCCCATTCAAAAATTTGTGGTACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGTGATGCACTGGCAGAGGAGAACAACAAAGTGAATGTAGGAGCAAATTGCCAACCAATTATCCCAAACCCATTACCAACAATGAATAATAATAACCATTCCAATGAAAAGCAGCCATTATTACCACTCTCTCATGACCTCATGATGACATTAATGCCTACAACGGCAGCAAAACCATTTAGCAACAACAATTCTCCCTCCCTTCAACTGAGTTCAAACAGAGGCTCACCTCATGATCAATATCACATGTCAGCCACAGCATTGCTTCAAAAAGCTGCACAAATGGGACCAATAGTGAGTAGTGAAAAAAGTTTTGTCACAAGCATGGCAACAATGGCACCACCATCATTCAGTACTAATGAGGCACAACTACAATCATCTGTAATCATGAGCCAGCAGTATGGTAGTCAACTACAGGACATTCCTAATTGTGATCAGTATAATTTCAGTGGCAATAATATTGGAATGAGTGGTTTGGATATGTTCAATGCTATATTGGATCAGAGTAAGGCCTTATCGAAGATCATAGATCAGCAGAATAGAAGCAGTGTTATGTGTCCAACAATTAATGTTAAAGGAAGTGAGGATGTGATGACTTTGGACTTGCTGGGGATAGGAGTAGGAGTAGGAGGACATGGCAATTTGTGTGGTGGAATCCAACAACAGTCAGAAACGGCTGCAAGAGATGATGAGATTTGGAGAAAGTACTGGTCAAACAAGAATAATATTGCAGGCTTTGAATCATTTTCAGCAACAAGTAGCTAG	1404	0.4117	MSNITSCDSGSLSTEHTREDAVKQQSLILGHLHTSNSHSSTTTNNSNGSNSNSQTPPPPAKKKRSLPGNPDPSAEVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTQIRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNVGANCQPIIPNPLPTMNNNNHSNEKQPLLPLSHDLMMTLMPTTAAKPFSNNNSPSLQLSSNRGSPHDQYHMSATALLQKAAQMGPIVSSEKSFVTSMATMAPPSFSTNEAQLQSSVIMSQQYGSQLQDIPNCDQYNFSGNNIGMSGLDMFNAILDQSKALSKIIDQQNRSSVMCPTINVKGSEDVMTLDLLGIGVGVGGHGNLCGGIQQQSETAARDDEIWRKYWSNKNNIAGFESFSATSS.	468

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca2g05314	467	ProSiteProfiles	Zinc finger C2H2 type domain profile.	90	112	IPR013087	-
Seca2g05314	467	MobiDBLite	consensus disorder prediction	1	74	-	-
Seca2g05314	467	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	39	433	IPR031140	-
Seca2g05314	467	SMART	c2h2final6	131	161	IPR013087	-
Seca2g05314	467	SMART	c2h2final6	166	186	IPR013087	-
Seca2g05314	467	SMART	c2h2final6	90	112	IPR013087	-
Seca2g05314	467	SUPERFAMILY	beta-beta-alpha zinc fingers	89	186	IPR036236	-
Seca2g05314	467	Gene3D	Classic Zinc Finger	69	135	-	-
Seca2g05314	467	Pfam	Zinc-finger double-stranded RNA-binding	90	112	IPR022755	-
Seca2g05314	467	ProSitePatterns	Zinc finger C2H2 type domain signature.	92	112	IPR013087	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05314	Seca-Chr2	139649999	139653948	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05314	49	223	IDZ Gene Family	AT3G50700	81.921	4.19e-110	331

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Seca2g05314		zf-C2H2_jaz	6.7e-05	CL0361

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05314	-		-	gmx:100785295	534.258

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