Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05291 ATGATGATGATGACAATGGAGGGAATGATGGACAAGGGGGTATTGGATGATGTGATAAGAAGGCTACTTGAAGGGAAAGGAGGAAAACAGGTTCAGCTTTCTGAGTCGGAGATCCGTCAACTCTGCGTCAACGCTCGACAAATCTTCCTCTCTCAGCCAATTCTCTTGGAGCTTCATGCTCCCATCCGCATCTGTGGTGATATACATGGTCAGTACCAAGACTTATTGAGGCTTTTTGAATATGGTGGCTACCCTCCTGCTGCAAACTACTTGTTTCTTGGGGATTATGTGGACAGAGGGAAGCAGAGTTTGGAGACTATATGTTTGCTTTTGGCCTACAAAATAAGATATCCGGACAAGATTTTTCTCTTGAGAGGGAACCATGAAGATGCAAAGATAAACCGAATTTATGGATTTTATGATGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTTACAGACTGCTTTAACTGTTTGCCAGTAGCTGCACTCATTGATGACAAAATACTTTGTATGCATGGTGGACTCTCCCCAGAAATGCAGAACTTAGATCAGATAAGGGAGGTTACAAGACCTACTGAAATTCCGGATAGTGGTCTCCTATGTGATCTGCTTTGGTCTGATCCTGATTCTAGCATTGAGGGCTGGGCAGACAGTGATCGAGGCGTTTCATGTACTTTTGGACCTGATGTCGTCACAGATTTTTTGGATAAAAATGATCTTGATCTTGTTTGCAGAGGTCATCAGGTTGTGGAGGATGGATACGAGTTTTTTGCTAAACGAAGATTAGTCACAATATTTTCTGCACCAAACTATGGTGGGGAATTTGACAATGCTGGTGCATTGTTGAGCGTTGATGAGTCTCTTGTATGTTCCTTTGAGATATTGAAACCCATGGACAAAGGATCAGGAAGTGGTACATCAAAAATGAATCTTAAGAAGCCCCCTAAACTTGGAAAGGTCTAG 975 0.4215 MMMMTMEGMMDKGVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLELHAPIRICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDKILCMHGGLSPEMQNLDQIREVTRPTEIPDSGLLCDLLWSDPDSSIEGWADSDRGVSCTFGPDVVTDFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPMDKGSGSGTSKMNLKKPPKLGKV. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05291 324 MobiDBLite consensus disorder prediction 305 324 - -
Seca2g05291 324 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Seca2g05291 324 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 311 - -
Seca2g05291 324 CDD MPP_PP1_PPKL 14 301 - -
Seca2g05291 324 SMART pp2a_7 33 303 IPR006186 GO:0016787
Seca2g05291 324 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
Seca2g05291 324 Pfam Serine-threonine protein phosphatase N-terminal domain 15 58 IPR031675 -
Seca2g05291 324 FunFam Serine/threonine-protein phosphatase 5 310 - -
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Seca2g05291 324 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Seca2g05291 324 SUPERFAMILY Metallo-dependent phosphatases 16 303 IPR029052 -
Seca2g05291 324 Gene3D - 8 308 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05291 Seca-Chr2 139448492 139451430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05291 62 249 Calmodulin-binding Proteins AT5G63870 32.735 3.30e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05291 K06269 - gmx:100805030 629.017