Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05289 ATGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAAAAGACCAAACGAACAGCACCCAAGTCCAATGATATCTACCTCAATCTCCTCGTCAAGCTTTATCGCTTCCTTGTTCGAAGGACAGGAAGCAATTTCAATGCTGTCATACTTAAGAGATTGTTCATGAGCAAGGCTAACAGGCCTCCAATTTCTCTGTCAAGGTTAATTAAGTTCATGAAGGGCAAGGAAGGTAAAATTGCTGTTGTAGTGGGGACTGTAACTGATGATATCAGAGTATACGAAGTTCCAGCCCTAAAAGTTACTGCACTTAGGTTCACAGAAACAGCACGAGCAAGAATAGAAAAAGCCGGTGGGGAATGCTTGACATTTGATCAGCTTGCTCTGAGGGCTCCTTTGGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAATGCACGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTGCCACACAGCAATACCAAGCCTTATGTACGATCTAAGGGGAGGAAATTTGAGAGGGCTAGAGGAAGGAGGAACAGCAAAGGATTTAGGGTTTGA 564 0.4574 MGIDLKAGGKSKKTKRTAPKSNDIYLNLLVKLYRFLVRRTGSNFNAVILKRLFMSKANRPPISLSRLIKFMKGKEGKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFERARGRRNSKGFRV. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05289 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Seca2g05289 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Seca2g05289 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Seca2g05289 187 MobiDBLite consensus disorder prediction 150 187 - -
Seca2g05289 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca2g05289 187 MobiDBLite consensus disorder prediction 170 187 - -
Seca2g05289 187 Gene3D - 1 187 - -
Seca2g05289 187 FunFam 60S ribosomal protein L18 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05289 Seca-Chr2 139435305 139445606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05289 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 76.882 7.63e-103 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05289 K02883 - pop:7491291 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05289 2 139435305 139445606 Seca2g05289 2 139435305 139445606 ECH
Seca8g06424 8 158720725 158721840 Seca2g05289 2 139435305 139445606 PCT