Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05286 ATGGCATTACTTAATTTCCTTTTCATTCTCCTGCTTTTACCCTCCTCATTTGAGGCTTTCTCAGATGAAATTCCCTCTGATATCCAAACCCAAGACATGCATGCCTTGATTGCACAAGCCTGCATGGACATTGAGAACCAAAACACATGCCTCACAAACATTCAAAATGAGCTCACCAAAATTGGCCCACCAAGCCCCACTTCTGTCATAAGTGCTGCACTCAGGACCACACTCAATGAAGCCCAAAGTGCTATTAACAACATAACAAGATTCAGCACATTCTCTGTCAGTAACAGGGAACAAATAGCCATAGAAGATTGCAAGGAGCTTCTTGATTTCTCTGTGTCTGAGCTGGCATGGTCATTAGGGGAAATGAGGAGAATCAGAGCAGGGGACAAAAACGTGCAATATGAAGGAAACCTTGAAGCTTGGCTAAGTGCAGCTCTTAGCAACCAAGACACGTGTCTTGAAGGATTTGAAGGCACTGACAGACGCCTTGAGAGCTACATTAGTGGAAGCTTAACACAAGTCACACAGCTTATAAGCAATGTTCTGTCTCTATACTCTCAATTGCATAGCTTACCCTTCAGGCCTCCAAGGAACACCACCACCACCACTCTTTTAACAAATAATGAAGAACAACAAAGCTTGGACATAGAGTTTCCTGAATGGATGACAGAGGGTGATCAAGAGCTCCTTAAATCCAGGCCACGTGGCATTCGTGCAGATGCTGTTGTGGCATTGGATGGAAGTGGTCACTACAGAACAATCACAGATGCTGTTAATGCAGCTCCAAGTCATAGCAACAGGAGATATATTATATACGTGAAGAAAGGACTTTATAAGGAAAATGTTGATATGAAGAAGAAAATGACCAACATCATGCTCGTAGGTGATGCTGTATCTGGGAAGGGTTTCATTGCAAGGGACATGACATTTAGGAACACTGCTGGACCAGTGAATCATCAAGCTGTGGCACTGCGTGTGGATTCAGATCAATCTGCTTTCTATAGGTGCAGTGTGGAAGGGCACCAAGATACTCTTTACGCACACTCACTGAGACAATTTTACCGTGAGTGTGAAATTTATGGCACCATAGACTTTATTTTTGGCAATGGGGCTGCTGTGTTGCAAAATTGCAAGATATACACTAGAGTCCCACTTCCTTTGCAGAAGGTTACCATCACGGCCCAAGGAAGAAAAAGCCCACATCAGAGCACTGGGTTTACAATCCAGGATAGTTATGTTTTGGCTACCCAGCCCACATATTTGGGGAGGCCATGGAAGCAATACTCTAGAACAGTATACATTAACACATACATGAGTGCGATGGTTCAACCACGAGGGTGGCTTGAGTGGCTTGGAAACTTTGCTTTGGACACATTGTGGTATGGTGAGTACAGAAATTATGGGCCTGGTTCATCTCTCGCGGGTAGAGTCAAATGGCCCGGTTATCATATCATGAAAGATGCTGGTACCGCTAGTTTCTTCACGGTTCAACGGTTCATTAATGGTGACTCATGCAATCACACCGACGCCACTCTCCGGAGGGCTTGGAAAGACGACGGAAGATTCATTCCACCGCCTGAGCAAGTCCTTCTCATCATTTCATTAACCAGCAGCTCCTTCCTTTACCAAGTACGAAGGTGTGGATTAGGAGCTGCTAATAATTTCAAAATGTCTGGGGGAGATTCACGAAAGAGTAGGAGACTGGCCCTAATAGGGGTTTCAACGTTCTTACTGGTGGCTATGGTGGTTGCTGTTACCGTTAGTGTTGGGTACAGCAAAAATGGTTCCGGCGAAGATTCAAAGGATAAAAACAAATCCCACGTGGCTTCATCCATGAAAGCCGTGAAAACCATTTGTGCACCCACAGATTACAAAAAGGAATGCGAGGAAAGTCTCACGGCACAGGCTGGTAACACAACCGACCCAAGGGAACTCATCAAAATCGCCTTCAACGTAACCATCACAAGAATCAGTGAGGGACTCGAGAAAACCCAGCTAATGCACGAGGTTGAGAACGATCCTCGAACCAAAGAGGCACTCGACACGTGTAAGCAACTCATGCACCTCTCCATTGAGGAATTCAAACGGTCACTCGAGAGATTCGGTAAATTCGATCTCAACAACCTCGACAATATCCTAACGAGTTTAAAGGTATGGCTCAGCGGTGCAATCACGTACCAAGAAACGTGCCTTGACGCGTTTGAGAACACAACAACCGAAGCTGGTCACAAGATGAAGGACGTTTTGCAAACTGCCATGCACATGAGCAGTAACGGTCTTGCTATCATCACCGAGCTGTCAAAAACTCTCGATGAGATGCATCTCACAAGGCCTGGGAGACGCCTCTTGAAGGAAGCTGAGGAGTTGGAAGTGCTTGGTCACGATGACTTTGAGCTTGAACTTCCTGAATGGGTTGATGATCGCGTCGGTGTTCGTAGGCTCCTACGCATGACCGCAAGGAAACTCAGTGCTCACGTGACCGTTGCCAAGGATGGAAGTGGAAATTTCACAACCATCAACGAGGCATTGAAACACGTGCCAAAGAATAACCTAAAGCCATTCGTTATCTACCTCAAGGAAGGCGTTTACGATGAGTACGTTGAAATCTCCAGAAACATGACTCACGTGGTTTTCGTTGGTGATGGTGGTAAAAAGTCACGCATCACTGGCAACAAAAACTTCATAGATGGCGTCGGTACCTACAGAACCGCCACCGTTGCTGTTCTTGGAGATTACTTCGTTGGAATAGGCATTGGATTTGAGAATTCCGCTGGTGCAGAAAAACATCAAGCAGTCGCTTTGAGGGTGCAAGCTGACAAGTCCATTTTCTACAAATGCAGAATGGATGGCTTCCAAGACACGCTTTATGCACACACCATGCGACAGTTCTACAGGGATTGCGTTATCTCAGGAACTATTGATTTTGTCTTTGGTGATGCCGTTGCTGTTCTCCAAAACTGCACTTTCGTGGTCCGAAAGCCATTGTCAAACCAGCAATGTATTGTGACCGCACAAGGAAGGAAGGAGAGGAACCAGCCATCAGGATTAGTGATCCAAGGAGGATCCATTGTTTCAGATCCCAAATACTATCCAGTTAGGTTTGACAACAAAGCCTACTTGGCCCGTCCATGGAAGAATTTCTCGAGAACTATCTTCATGGATACTTACATTGGTGATTTGATCACACCTGATGGTTACATGCCATGGCAGACATTGGAAGGGCTTACAGGAATGGACACGTGCTTCTATGCGGAGGTGAATAACCGTGGACCTGGTTCAGATAAGTCGAAGCGCGTGAAATGGCAAGGGGTGAAGACCCTGACATCACAGGGAGCGAAGAATTTCTTGGCATCAACGTTCTTCCACGGAGATGACTGGATTAAGGTTACTAGAATTCCTTATTACCCTGGCGTGGTCTCCCCCACTCATCATTGA 3444 0.4588 MALLNFLFILLLLPSSFEAFSDEIPSDIQTQDMHALIAQACMDIENQNTCLTNIQNELTKIGPPSPTSVISAALRTTLNEAQSAINNITRFSTFSVSNREQIAIEDCKELLDFSVSELAWSLGEMRRIRAGDKNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYSQLHSLPFRPPRNTTTTTLLTNNEEQQSLDIEFPEWMTEGDQELLKSRPRGIRADAVVALDGSGHYRTITDAVNAAPSHSNRRYIIYVKKGLYKENVDMKKKMTNIMLVGDAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLATQPTYLGRPWKQYSRTVYINTYMSAMVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSLAGRVKWPGYHIMKDAGTASFFTVQRFINGDSCNHTDATLRRAWKDDGRFIPPPEQVLLIISLTSSSFLYQVRRCGLGAANNFKMSGGDSRKSRRLALIGVSTFLLVAMVVAVTVSVGYSKNGSGEDSKDKNKSHVASSMKAVKTICAPTDYKKECEESLTAQAGNTTDPRELIKIAFNVTITRISEGLEKTQLMHEVENDPRTKEALDTCKQLMHLSIEEFKRSLERFGKFDLNNLDNILTSLKVWLSGAITYQETCLDAFENTTTEAGHKMKDVLQTAMHMSSNGLAIITELSKTLDEMHLTRPGRRLLKEAEELEVLGHDDFELELPEWVDDRVGVRRLLRMTARKLSAHVTVAKDGSGNFTTINEALKHVPKNNLKPFVIYLKEGVYDEYVEISRNMTHVVFVGDGGKKSRITGNKNFIDGVGTYRTATVAVLGDYFVGIGIGFENSAGAEKHQAVALRVQADKSIFYKCRMDGFQDTLYAHTMRQFYRDCVISGTIDFVFGDAVAVLQNCTFVVRKPLSNQQCIVTAQGRKERNQPSGLVIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGLTGMDTCFYAEVNNRGPGSDKSKRVKWQGVKTLTSQGAKNFLASTFFHGDDWIKVTRIPYYPGVVSPTHH. 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05286 1147 CDD PMEI-like_3 620 771 - -
Seca2g05286 1147 Pfam Plant invertase/pectin methylesterase inhibitor 36 187 IPR006501 GO:0004857
Seca2g05286 1147 Pfam Plant invertase/pectin methylesterase inhibitor 617 765 IPR006501 GO:0004857
Seca2g05286 1147 ProSitePatterns Pectinesterase signature 2. 972 981 IPR033131 -
Seca2g05286 1147 ProSiteProfiles BRCT domain profile. 711 825 IPR001357 -
Seca2g05286 1147 Pfam Pectinesterase 300 506 IPR000070 GO:0030599|GO:0042545
Seca2g05286 1147 Pfam Pectinesterase 243 299 IPR000070 GO:0030599|GO:0042545
Seca2g05286 1147 Pfam Pectinesterase 828 1127 IPR000070 GO:0030599|GO:0042545
Seca2g05286 1147 PANTHER PECTINESTERASE 580 1131 - -
Seca2g05286 1147 CDD PMEI-like_4 49 191 - -
Seca2g05286 1147 FunFam Pectinesterase 300 516 - -
Seca2g05286 1147 SUPERFAMILY Pectin lyase-like 241 510 IPR011050 -
Seca2g05286 1147 FunFam Pectinesterase 822 1141 - -
Seca2g05286 1147 SUPERFAMILY Pectin lyase-like 826 1140 IPR011050 -
Seca2g05286 1147 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 192 IPR035513 -
Seca2g05286 1147 FunFam Pectinesterase 34 193 - -
Seca2g05286 1147 Gene3D Invertase/pectin methylesterase inhibitor family protein 612 771 IPR035513 -
Seca2g05286 1147 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
Seca2g05286 1147 NCBIfam pectinesterase inhibitor domain 4 192 IPR006501 GO:0004857
Seca2g05286 1147 NCBIfam pectinesterase inhibitor domain 612 769 IPR006501 GO:0004857
Seca2g05286 1147 ProSitePatterns Pectinesterase signature 2. 362 371 IPR033131 -
Seca2g05286 1147 SMART PMEI_2 32 187 IPR006501 GO:0004857
Seca2g05286 1147 SMART PMEI_2 613 765 IPR006501 GO:0004857
Seca2g05286 1147 Gene3D - 822 1141 IPR012334 -
Seca2g05286 1147 Gene3D - 238 516 IPR012334 -
Seca2g05286 1147 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 616 770 IPR035513 -
Seca2g05286 1147 FunFam Pectinesterase 614 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05286 Seca-Chr2 139397230 139402418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05286 1 505 Carbohydrate Esterase AT3G05620 57.856 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05286 K01051 - gmx:100801686 965.681