Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05281 ATGGGGCATTTATCATCTATGTTCAATGGATTGGCAAGGTCCTTTTCAATAAAGAAAGGAAAAAGTTCTGGGAGATGTGGTGGGAGAGAAGCTGCTGAAGCAATGGCAAAGGAAGCTAAGAAAAATGACTTGATATTGTGTAGCTCTGGCACTGTTAATGTGGATGGTTCAAACAACTTTGCCTCCATTTTCTCCAAAAAAGGCCAGAAAGGTGTCAACCAGGATTGCTGCATAGTATGGGAGGAATTTGGATGCCAAGAAGACATGATCTTCTGTGGGATTTTTGATGGACACGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCTCCTTCTTTGCTATGCAACTGGCAAGAGACACTTGCTCAATCTTCAGATGAGCCAGATATTGATACAGAGGAAGAGAAAAAGCAACAAAGGTTCAATATATGGAAGCATTCTTACTTGAAAACTTGTGCTGCCATTGATCATGAACTAGAGCGGTATCGCAAGATAGACTCATTTTATAGCGGAACCACTGCCTTATCAATTGTTAGACAGGGTGAATTCATTTTCATAGCAAATGTTGGTGATTCTCGTGCTGTATTAGCTACAACATCAGATGATGGAAGTTTGATACCAGTTCAGCTAACAGTTGATTTCAAGCCAAATTTACCACAAGAGGCAGAGAGAATAATTCAATGCCAGGGAAGAGTGTTCTGTTTACATGACGAGCCTGGGGTGCATAGGGTGTGGTTACCAGATGAAGAGTCTCCAGGATTAGCCATGTCTAGGGCTTTTGGTGATTATTGCATTAAAGACTATGGTCTTATTTCAGTGCCTGAAGTAACACACAGAAATATAAGCAATAAAGACCAGTTTGTTGTGTTAGCCACTGATGGGGTTTGGGATGTGATCTCCAATCAAGAAGCAGTAGATATTGTATCTTCAACACCAGACAAAGCAAAATCAGCAAAACGTCTAGTGGAGTGTGCAATGCATGCATGGAAACGCAAGAGAAGGGGCATTGCCATGGATGATATTTCAGCAATTTGTCTCTTCTTTCACTCTCCCCTTTCACCAGACCAAGTTAGGCTTAGCCAAGTTGCTAAATTGAAATAG 1113 0.416 MGHLSSMFNGLARSFSIKKGKSSGRCGGREAAEAMAKEAKKNDLILCSSGTVNVDGSNNFASIFSKKGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQSSDEPDIDTEEEKKQQRFNIWKHSYLKTCAAIDHELERYRKIDSFYSGTTALSIVRQGEFIFIANVGDSRAVLATTSDDGSLIPVQLTVDFKPNLPQEAERIIQCQGRVFCLHDEPGVHRVWLPDEESPGLAMSRAFGDYCIKDYGLISVPEVTHRNISNKDQFVVLATDGVWDVISNQEAVDIVSSTPDKAKSAKRLVECAMHAWKRKRRGIAMDDISAICLFFHSPLSPDQVRLSQVAKLK. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05281 370 Gene3D - 46 354 IPR036457 -
Seca2g05281 370 Pfam Protein phosphatase 2C 80 327 IPR001932 -
Seca2g05281 370 PANTHER PROTEIN PHOSPHATASE 43 350 IPR015655 GO:0004722|GO:0006470
Seca2g05281 370 SUPERFAMILY PP2C-like 56 353 IPR036457 -
Seca2g05281 370 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Seca2g05281 370 FunFam Probable protein phosphatase 2C 34 51 354 - -
Seca2g05281 370 CDD PP2Cc 59 352 IPR001932 -
Seca2g05281 370 SMART PP2C_4 54 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05281 Seca-Chr2 139328226 139332159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05281 1 353 PP2C-type Phosphatase Gene Family AT3G05640 74.719 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05281 - - gmx:100808955 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05281 2 139328226 139332159 Seca2g05281 2 139328226 139332159 ECH
Seca6g02449 6 87196564 87199022 Seca2g05281 2 139328226 139332159 PCT