Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05275 ATGGTAAGGGGAGGAAAGGTTAGTGGCAAACGCAATTTCAGGAAAAAGGTTCGGTCAAAAGAAGGTGGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCAGGTGATGGTGGGGATGTGTCTGATTGTCCAGAGGATTATTGCTCCTCTTTAGATGGATGTGCATCTGAGGAGAGTTTTGATGGTTTTATAGAAGAGGAAGATGAAGAGGAGGAGATTCAACGGGTGAGGAAATTCAATAGATCAAAGACCAAAAATGGCTTATGTGGTCAGAGGAAAAATGCAAGTAAAACCTCGCGAAAGAGGGCAAGAAATACATATGCAAAACAACTTGAACAAGAACGAGATGGAGATGAAGGTGAGGATGAGGATGAGGATTTCAATTATGATGATGATGAAGATGAAGAGTTTACACCAGAGGAAGAAGATTACTCAGACGAGGAAGAAGAAACAAGGGACAGAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTTTTGCAGAGAAGGGTTTCTGTGACTTCTAGTAGAGGGCGAAAAAGGAGGAGTTCTAGAGTTTCAAAGAAGCCCTTGAGAAAGAAAAGACGAAGGAGTGGAGGATTGAGGAGGAAAGTACAACGTGATGATGTAGATAATTTTATAGATAATGGCCCACTCATCCAGATAAGTAGGAGGGAAAAACCGGGCCGGAAAAGAAGAAGGCTTCTCCTTGAAGATTCAAATTCAGATTCAGATTGTTTGTCCGGATCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAGAGAACAGGTGAGAGAAGCCAAAGAATTGTGTGAAAGTTTAAGAAGGAACTTGAGGAGTGCTTCTGTTCTAATGAAAAATGAGGAGGTTGGAGTACATGAAAATCCACATCAACAACGGAAGCCTCCAGGACGGAAGGGTAAGGAAAAGATAGAGGAACCTCAAGGAAGAAAGGGCAAGGAAAAGGTACAGGATTTAAAAAGTGAGGTGGGAAAGCAGGTTTGTGGAATTTGTCTGACCGAGGAAAATAAAAGAAAAGTAAGAGGAGTCTTAAATTGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTGGAATCCCGCTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAGCTGGGGTTGATTTGAGAGAAGTGGTGATACAGGTGCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAGGAGCTCAGGAGCTATATTGATCCATATGAGTCTGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACATACTTATTGTGTTGGTTTGGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAATTCTCAAGTTCAAGAACGTGTGGCTGATTCAAGAGTGACAAACCAAAGAATGTCTGTTAGACCATCACCTGTTCTTCATGTGCGAGAAAGTATAGACCTCAATTTGATGTCTTCACCTCGTTTGTCTTTTAGTCAAGGGTCTGGGCATCTTTCCTCTTCTAGATTTTCTGGCAGAAGTGCTGAAGGAGCTTCTCCAGTATCTGGAGGAGGGGCACCAACTTTATCAGAGAGACGATGGATACAACGTCAAATTCATCAGCTTCTCCAAGTAGATAGAATGACTTCTACAACTGGCAGAACCTCAGCTACCAGTTCAATGGGTAACTTGCATAACTCTCAAATAGATCTAAGTAGGGAACCAGCCACTCAACATACAAGGAGACAGGATGCAGGAACATCATATCACACATTCTTGGAGGAGAGATTAGGCAACGATATCTCTCCATTTATGCAGAATGGAGATCCCTTCCCCATAAGAATAAGCAATTCAAGGAGACCAGTGGTTCAGGATTCAACCATGTTTTCCAACAGGCCTATTAATGGGATGTTATGGCCTGGACTTTTGGGGACATCCACATTATCAGATTACAATCCAATCCATCAGTTCAGCAGCAGATCAAATATTGTCACTGATAGTAATTTGTCCCCTGCTATCAAAGAAGAAAGTAACTTCCACATTGTAAAGGAGCAACTGCAATCAATGGTTAGAAGCCATCTGAAGAGCTTGTCTCAAGATATTGAATTAGGCTATAATACTTTCAAGGACATTGCAAGGAGATCTACACATACCATACTCGCAGCTTGTGGTCTCGAGCACAATGAGAATGAGGTTTTGATTGTGCCCTCTCCATCCGCCTGTCCCCACATGGAACTAATGGCTGGTGGACAAACGAGTATGATGAAGGGTTACTGCTGCTCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAAAGGATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG 2451 0.4231 MVRGGKVSGKRNFRKKVRSKEGGGSDDSDEDYVVSGDGGDVSDCPEDYCSSLDGCASEESFDGFIEEEDEEEEIQRVRKFNRSKTKNGLCGQRKNASKTSRKRARNTYAKQLEQERDGDEGEDEDEDFNYDDDEDEEFTPEEEDYSDEEEETRDRKKKNNGMKMGKKVLQRRVSVTSSRGRKRRSSRVSKKPLRKKRRRSGGLRRKVQRDDVDNFIDNGPLIQISRREKPGRKRRRLLLEDSNSDSDCLSGSSDYEFTISEEEREQVREAKELCESLRRNLRSASVLMKNEEVGVHENPHQQRKPPGRKGKEKIEEPQGRKGKEKVQDLKSEVGKQVCGICLTEENKRKVRGVLNCCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPARSTAGVDLREVVIQVPERDQVYQPSEEELRSYIDPYESVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSNSQVQERVADSRVTNQRMSVRPSPVLHVRESIDLNLMSSPRLSFSQGSGHLSSSRFSGRSAEGASPVSGGGAPTLSERRWIQRQIHQLLQVDRMTSTTGRTSATSSMGNLHNSQIDLSREPATQHTRRQDAGTSYHTFLEERLGNDISPFMQNGDPFPIRISNSRRPVVQDSTMFSNRPINGMLWPGLLGTSTLSDYNPIHQFSSRSNIVTDSNLSPAIKEESNFHIVKEQLQSMVRSHLKSLSQDIELGYNTFKDIARRSTHTILAACGLEHNENEVLIVPSPSACPHMELMAGGQTSMMKGYCCSCFDSFVGDVVKRILDTRMSSQWLRLGL. 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05275 816 SMART ring_2 338 379 IPR001841 -
Seca2g05275 816 Pfam Ring finger domain 337 380 IPR001841 -
Seca2g05275 816 PANTHER F18C1.6 PROTEIN 1 806 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 293 326 - -
Seca2g05275 816 SUPERFAMILY FYVE/PHD zinc finger 402 476 IPR011011 -
Seca2g05275 816 CDD RING-HC_Topors 336 383 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 575 594 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 223 253 - -
Seca2g05275 816 Pfam PHD-finger 430 476 IPR019787 -
Seca2g05275 816 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Seca2g05275 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 402 IPR013083 -
Seca2g05275 816 MobiDBLite consensus disorder prediction 65 208 - -
Seca2g05275 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 501 IPR013083 -
Seca2g05275 816 SMART PHD_3 430 475 IPR001965 -
Seca2g05275 816 MobiDBLite consensus disorder prediction 525 543 - -
Seca2g05275 816 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Seca2g05275 816 ProSiteProfiles Zinc finger PHD-type profile. 428 477 IPR019787 -
Seca2g05275 816 SUPERFAMILY RING/U-box 337 386 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 1 45 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 289 326 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 176 203 - -
Seca2g05275 816 Coils Coil 260 287 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 525 556 - -
Seca2g05275 816 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05275 Seca-Chr2 139268301 139272136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05275 425 474 C2H2 Transcription Factor Family AT3G01460 46.154 1.64e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca2g05275 PHD 4.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05275 - - psat:127132436 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05275 2 139268301 139272136 Seca2g05275 2 139268301 139272136 ECH