Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05272 ATGCAGAAATGGTCATCAAGTGAGATCAAGAAGTGTTGTACTGATTGCAAAACCACCAAAACCCCACTCTGGAGAGGAGGACCAGCTGGCCCTAAGACTTTGTGCAACGCTTGCGGAATTAGGTACAGGAAGAGAAGGGCTTGTACGGTGGGAATGAACAAAGGACAAGAGAGGAAGAGAGAGAGAACACAGAGACAGAGCATCTCTGGCTCTGGTAAAACGGTTGTTGTTGGTGGTGGTGGAAGCGATTTGAGGGAGTCTCTGAAAATGAAGTTAGTGGCGTTGGGTGAGGAGGTTTTGTTGCAACGGTCACCTTCTCTTTTGAAGAAACAGAGGAGGAATAAGTTAGGGGAGGAGGAACAAGCAGCTATGTGTTTGATGGCACTGTCTTGTGGCTTTGTTTTTGCTTGA 411 0.472 MQKWSSSEIKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRACTVGMNKGQERKRERTQRQSISGSGKTVVVGGGGSDLRESLKMKLVALGEEVLLQRSPSLLKKQRRNKLGEEEQAAMCLMALSCGFVFA. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05272 136 Gene3D - 8 69 IPR013088 GO:0006355|GO:0008270
Seca2g05272 136 ProSiteProfiles GATA-type zinc finger domain profile. 13 43 IPR000679 GO:0006355|GO:0043565
Seca2g05272 136 ProSitePatterns GATA-type zinc finger domain. 13 38 IPR000679 GO:0006355|GO:0043565
Seca2g05272 136 MobiDBLite consensus disorder prediction 52 80 - -
Seca2g05272 136 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 47 - -
Seca2g05272 136 SMART GATA_3 7 57 IPR000679 GO:0006355|GO:0043565
Seca2g05272 136 Pfam GATA zinc finger 13 46 IPR000679 GO:0006355|GO:0043565
Seca2g05272 136 PANTHER OS01G0976800 PROTEIN 5 135 - -
Seca2g05272 136 MobiDBLite consensus disorder prediction 52 66 - -
Seca2g05272 136 CDD ZnF_GATA 13 46 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05272 Seca-Chr2 139247971 139249574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05272 7 136 C2C2-Gata Transcription Factor Family AT3G06740 49.618 1.82e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca2g05272 GATA 2.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05272 - - cam:101512290 164.851