Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05267 ATGGATCGGGAAGGAGGAGGATCCAACGGCGGATCTTGCTACTACTCTGTTCTCGGGATTCGCAGGGACGCCTCCTCCTCTGATATTCGCACTGCTTACCGCAAGCTTGCTATGAAGTGGCACCCAGACAAATGGGCTCGGAACCCTGCAACGGCCGGAGAAGCAAAGCGGCGCTTTCAGCAAATCCAGGAAGCTTACTCAGTTCTCTCTGATGAGTCTAAGAGGTCAATGTACGATGCTGGGCTTTATGATCCCTTAGAGGAAGATGACCAAGTCCGTATCGTTTCCTTTCAATTTGATTTGCAGTTGCAGAGCATGAGGCAAAGCTTTTTGCCGTAA 339 0.5074 MDREGGGSNGGSCYYSVLGIRRDASSSDIRTAYRKLAMKWHPDKWARNPATAGEAKRRFQQIQEAYSVLSDESKRSMYDAGLYDPLEEDDQVRIVSFQFDLQLQSMRQSFLP. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05267 112 SMART dnaj_3 12 74 IPR001623 -
Seca2g05267 112 PANTHER PUTATIVE, EXPRESSED-RELATED 8 91 - -
Seca2g05267 112 Pfam DnaJ domain 14 79 IPR001623 -
Seca2g05267 112 CDD DnaJ 13 71 IPR001623 -
Seca2g05267 112 Gene3D DnaJ domain 2 100 IPR036869 -
Seca2g05267 112 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Seca2g05267 112 PRINTS DnaJ domain signature 54 74 IPR001623 -
Seca2g05267 112 PRINTS DnaJ domain signature 33 48 IPR001623 -
Seca2g05267 112 PRINTS DnaJ domain signature 15 33 IPR001623 -
Seca2g05267 112 SUPERFAMILY Chaperone J-domain 13 87 IPR036869 -
Seca2g05267 112 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05267 Seca-Chr2 139226729 139229065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05267 13 80 C2H2 Transcription Factor Family AT1G74250 43.478 2.84e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05267 - - gmx:100798656 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05267 2 139226729 139229065 Seca2g05267 2 139226729 139229065 ECH