Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05256 ATGCAATTCGCTACAGTTCGGTGTACTGAACTATATTTTGAACAGCCCTGCTTGTTGGCTGGATACTACTGCTCAGTTTGTGAATGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATCAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCAAACAGGTACAGCTTAAGATAGCTTTCTAA 213 0.4131 MQFATVRCTELYFEQPCLLAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQLKIAF. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05256 70 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 20 68 IPR040107 GO:0000398|GO:0005681
Seca2g05256 70 SMART ZnF_U1_5 19 53 IPR003604 GO:0003676|GO:0008270
Seca2g05256 70 FunFam zinc finger matrin-type protein 2-like 18 54 - -
Seca2g05256 70 SUPERFAMILY beta-beta-alpha zinc fingers 20 63 IPR036236 -
Seca2g05256 70 Gene3D Classic Zinc Finger 14 54 - -
Seca2g05256 70 Pfam Zinc-finger of C2H2 type 22 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05256 Seca-Chr2 139158650 139159094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05256 20 65 C2H2 Transcription Factor Family AT3G05760 89.130 3.37e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g05256 zf-C2H2_jaz 2.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05256 K12848 - mnt:21394111 98.5969