Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05249 ATGCCAAATCTTAGCTCAAGGTGGACCCCACAATTGGCCATAAATATTGACCCCTCCTTATGGCCTGCTAGCAAGCAGTGTGTTTTCTTGAGCCAAAGTCTAGTCTTTCCAATACAATATCCTTATAGTGTCGACATGGTTTGCCAGGAAGAGTTATTGATTGAAAAAGTATGTGAGCTCTATGAACAAATTTCAAGTCTTGAGTCTCTCAAACCTTGCAAAAATGTCGACATGCTTTTCACCCAACTTGTCCTCACATGCATGCCACCTAGTCCCATAGATGTCACCAATCTCACCAAAACTGTTCAAGACATTAGATCACATCTTATAAGGCTTTGTGGTGAAGCTGAGGGTTATTTGGAGACCCATTACTCTTCCATCTTAGGCTCTTACCATGACAATCCCCTTGACCATCTCCATATTTTCCCTTACTATTCCAATTACCTCAAACTTGCTCTCCTTGAATTCACTATCTTAACCCAACACTGCACACATGTCCCTAACAAAATTGCCTTTGTGGGTTCAGGACCTCTTCCTCTTACCTCAATTGTCTTGGCATCCAATCACTTACCTTCCACCACTTTCCACAACTATGACATCGACCCTTCAGCCAATTCAAGTGCTCTGCGCTTGGTTTCCTCTGACCCTGACTTGTCAAAAAGAATGGTTTTTCACACCAATGATATCTTGGATGTGTCAAACGATTTGAAAGAGTATGAAGTTGTTTACTTGGCAGCACTTGTGGGTATGGACAAGGAAGAAAAGAATAAAATCATTGATCACTTGGCTAAGCATATGGCCCCAGGTGCTCTTTTGATGCTAAGGAGTGCTCATGGGGCTAGAGCTTTTCTCTATCCTGTGGTTGATCCTTGTGATCTTCAAGGCTTTGAGGTCCTCTCTGTGTTTCATCCAACTGATGAGGTTATCAATTCAGTTGTCATAGCACGTAAATATCCTATGCCTATACACTCTCTTGAGCAAGGCCTTGGTTCTATCATCCTACCAAATAAATGCTCTGAGATTCAAGTCTTCAACCATGGGAATATGATTGAGGAATTGACAATTGAGGAGCAACTCTCATAA 1083 0.4192 MPNLSSRWTPQLAINIDPSLWPASKQCVFLSQSLVFPIQYPYSVDMVCQEELLIEKVCELYEQISSLESLKPCKNVDMLFTQLVLTCMPPSPIDVTNLTKTVQDIRSHLIRLCGEAEGYLETHYSSILGSYHDNPLDHLHIFPYYSNYLKLALLEFTILTQHCTHVPNKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDIDPSANSSALRLVSSDPDLSKRMVFHTNDILDVSNDLKEYEVVYLAALVGMDKEEKNKIIDHLAKHMAPGALLMLRSAHGARAFLYPVVDPCDLQGFEVLSVFHPTDEVINSVVIARKYPMPIHSLEQGLGSIILPNKCSEIQVFNHGNMIEELTIEEQLS. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05249 360 Gene3D Vaccinia Virus protein VP39 50 319 IPR029063 -
Seca2g05249 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 169 319 IPR029063 -
Seca2g05249 360 Pfam Nicotianamine synthase protein 50 319 IPR004298 GO:0030410|GO:0030418
Seca2g05249 360 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 46 322 IPR004298 GO:0030410|GO:0030418
Seca2g05249 360 PANTHER NICOTIANAMINE SYNTHASE 3 49 353 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05249 Seca-Chr2 139115934 139117016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05249 46 357 Nicotianamine Synthase Gene Family AT5G56080 61.270 1.97e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05249 K05953 - gmx:100794250 541.962