Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05247 ATGGAAGAATTGAAACCTGTTACTGTTTTGTCTGCTACTGCTTCTGAATTGCATCTAGGATCAGTGGCTAATAACTACCTCCAGCTGCATCAACACAATATCGTAACGGCCGGGTCGGATCGGCTCAAGATCCAGATCGCGAATCACCCTCTTTATCCAGATTTAGTGTCTGCATACATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTAGCATCCCTTCTGGAAGAAATAGGACGAGAAATCCACCCCATGAATGCACCCTGTGAGATAGGGCATGGTCCTGAACTTGACGAGTTCATGGAATCATACTGTGAAGTTCTTCTCAAATACAAAGAGGAGTTGTCGAAGCCCTTCAATGAAGCGAGTTTGTTTTTGGGTAATATGGAATCGCAACTCAGCAACCTTTGTAAGGGAACACTGACAAAGTCTTCGGATAACAACTGCTCAGCTCTCTGTGTTTTTGTATTTTGGTCAGATGAGGAATTATTAAGTTGCGGGGAAATCGAAGCAGTTGAAGGTCATGAATCTTGTGGTAGTCACCCGGGTGATCAAAAGCTTAAAGAAATGCTCCTTCGTAAGTACAGTGGCCATTTTGGCAATTTGAGAAAGGAATTTCTAAAAAGAAGGAAAAAGGGTAAGCTGCCAAAAGATGCAAGGGTGACACTCATGGACTGGTGGAACACCCATCATAGATGGCCTTATCCTACTGAGGAGGAGAAAGTGCAGCTGTCAGACATGACTGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGGCATTGGAAACCAAATGAGGATATGCGATTTGCCATTCTGGACGGTGTAACTGACTGCGGCATAAGACCACCTATGTTTTTTTAG 879 0.4369 MEELKPVTVLSATASELHLGSVANNYLQLHQHNIVTAGSDRLKIQIANHPLYPDLVSAYIECQKVGAPPELASLLEEIGREIHPMNAPCEIGHGPELDEFMESYCEVLLKYKEELSKPFNEASLFLGNMESQLSNLCKGTLTKSSDNNCSALCVFVFWSDEELLSCGEIEAVEGHESCGSHPGDQKLKEMLLRKYSGHFGNLRKEFLKRRKKGKLPKDARVTLMDWWNTHHRWPYPTEEEKVQLSDMTGLDQKQINNWFINQRKRHWKPNEDMRFAILDGVTDCGIRPPMFF. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05247 292 SMART KNOX1_2 40 84 IPR005540 GO:0003677|GO:0005634
Seca2g05247 292 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677
Seca2g05247 292 Gene3D - 204 276 - -
Seca2g05247 292 SMART KNOX2_2 87 138 IPR005541 GO:0003677|GO:0005634
Seca2g05247 292 Pfam KNOX1 domain 42 83 IPR005540 GO:0003677|GO:0005634
Seca2g05247 292 SMART ELK_2 186 207 IPR005539 GO:0003677
Seca2g05247 292 Pfam KNOX2 domain 91 137 IPR005541 GO:0003677|GO:0005634
Seca2g05247 292 SUPERFAMILY Homeodomain-like 208 276 IPR009057 -
Seca2g05247 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 275 - -
Seca2g05247 292 ProSiteProfiles ELK domain profile. 186 206 IPR005539 GO:0003677
Seca2g05247 292 SMART HOX_1 208 273 IPR001356 GO:0003677
Seca2g05247 292 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981|GO:0006355
Seca2g05247 292 Pfam ELK domain 187 207 IPR005539 GO:0003677
Seca2g05247 292 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677|GO:0006355
Seca2g05247 292 CDD homeodomain 209 270 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05247 Seca-Chr2 139104712 139110259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05247 42 279 Homeobox Transcription Factor Family AT1G70510 50.813 6.37e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca2g05247 KNOX2 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05247 - - gmx:100814830 404.06