Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05244 ATGGCGTCTCTGCAAACAAACGTCGATTCCAGTAATTCACAACGATCCAATCATAAGAAGCGCCGGAAAATCACCGGTGATCGTAATTCCCTCACTCTCATTCCTTGGAGATCCCAAACCGAGCAGCGGATCTACACCTCCAACCTCGTCGACGCTCTCCGCCGCAGCCATTCGCCGCCGTCCAAGCCTATTTCCGGCCGCGAAGTTCGCGTGGCTGCCGACCGGATTCTGGCTGCCACAGCCAGGGGACGAACTCAGTGGAGCCGAGCGATTCTGGCGAGTCCGATCAGACGTTGGAAGCTCCAGTTGCACAAGAAGGTGAAGAAGGCTGCGAACGGATTGATGAAGAAGAGGAACCCGGAGATTCGGAGAAGGTTGCCGGCGGTGCAGAGGAAAGCGCGCGTTCTCAGTCGGTTAGTCCCTGGTTGCCGTAAGGTCTCTTTCCCGAATCTTCTGGAAGAAGCAACTGACTATATTTCGGCGTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCACCGAGCTTCTCGCCGGTGGTGCGCCGCCGCCGCTCGCCTCGCCTCGAGTTGAGTTGAGTTGA 579 0.5734 MASLQTNVDSSNSQRSNHKKRRKITGDRNSLTLIPWRSQTEQRIYTSNLVDALRRSHSPPSKPISGREVRVAADRILAATARGRTQWSRAILASPIRRWKLQLHKKVKKAANGLMKKRNPEIRRRLPAVQRKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALTELLAGGAPPPLASPRVELS. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05244 192 CDD bHLH_AtIBH1_like 123 173 IPR044549 GO:0006355
Seca2g05244 192 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g05244 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Seca2g05244 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 182 IPR036638 GO:0046983
Seca2g05244 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 37 176 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05244 Seca-Chr2 139057484 139058062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05244 29 169 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 52.632 9.72e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05244 - - gmx:100783462 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05244 2 139057484 139058062 Seca2g05244 2 139057484 139058062 ECH