Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05242 ATGTCAAGACGGTACAAGAGTACCGGAGTTGAAGCCGAACAAGGTCGTAAGAGGAGAGAGGATAACCTCATTCAGATCAGGAAGAACAAACGCCAACACACTCTCCTCAACAAGCGAAACCACCCTCTGCCTCTTCTTCACCATCATCATATTCATGATCATGCCTTTCCCCTCTCCAACACGTTGGAAGGTCATAATAATAATCATAATATTCCTGCCTTGCTGCAACGAATATGGTCCAACGACCCTGCTGCACAACTGGAGGCAACTGCTCAATTCAGAAAGCTACTATTATTAACCTTATCAGTAGACAGCCCTCAAATTGATGAGGTCATCGAGGAACGTCTTGTCTCTAGGTTTGTCGAGTTTTTGAGATACCATGATTTACCCAATTTGCAGAATGAGGCTGCATGGGCTCTGAGCAATATTACTTGGGGAAAATCTGAGCACACAAGACTTGTAATTAAACAAGGTGCTGTTCCCGTGCTTGTCAACCTTCTGCACTCCAGTACCATTGATGTCAAAGAAAAGGCACTATGTTGTTTAGGTAATATTGCACTAACCAGTAGGGATATGGTTCTTGATCATGGTGCACTCTTGCCAATACTCTCCCTGTTGAAGCACTTTACAACATTACCTCTGTATTTGTTAAGGACTGCTACATGGGCTTTATCTAATCTCTGTAGTGGAAACCCTCCTCCACCTTTTCAACAGGTAAAGCCTGCCTTGCCTGTCCTTGGGCAACTCATCCACTTGAATGATGAAGGAATCATGAGCAATGCTTGCTGGGCTCTCTCTTACCTTTCAGATAGCACAATTGAAAAAATCCAAGCTCTCATTGAAGAAGGACTTTGCCCTCAACTTATCCACCTTCTCAACTCGCATCCATCACCTCTAGTTATTGAGCCTGCTCTTCGGACACTTGGAAATATTGTTTCTGGTAATGATGTTCAGACTCAGCTTGTAATTGACAATCTAATACTTCCTTCTCTTCAACGATTTCTGACACAAGATCACAAAAAAAGCATCAAGAGAGAAGCTTGTTGGATAATTTCAAATATAACAGCTGGGAATGAAGATCAAATACAGGCTGTCCTTGACGCCAATATTATTCCTGCTCTTGTTGATCTTATTCACTATGGGGAGTTTGACATTAAGATGGAGGCTGCCTGGGCCATCAACAATGCCATTTTTGGAGGATCTCATTGGCAGATAAGGTTCCTTACGAGTCAAGGTTGCATTGAGGCACTATGTGTTCTCTTGACCTGTCCAGACCCAAATGTTGTGAACGTTTGTCTAGAGGGTCTGGAGCGCATTTTAAAGGTGGGAAAAGTTGATAAGGAACTGGGACTACATGGTGGAGTTAATGTTTATGCTCAAATGGTTGAAGATTGTAAAGGATTGGAAAATATTGAAAATCTGGAGACCCATAGCAACATTGAGATTTATGGTCTGGCTGTGAAGATTTTGGGGACATATTTTGTTGATGACTTGCAAGAAGATCCACCGGATGGGTATGCTTGTGAGTTAAATTTTGGAGGGGAAGTGAGGGAAGGGAAGGGTTTACTGGAAGCCCTTCCCTCTTTTGTGTTTGTGGAATACTATGATATTCCTGATATGGTAGAAGGAGTGTGGTCTGATGACCATATTGTACGAATGGGCGCAACTGCTAAATTTAGAGAGTTCTTAGCATCACGTTACCCTCCTCCGGTTGACGTGGTGATCATCAGGGCAGTTATCCCTAGGTTTGTGCAGTTTTTGAAAAGGAATTATCCACCCCGATTGAAGGTTAACGCTGCATGGTGTCTGAGCAATATTGCTTGTGGAAATTCTGAGCTTATAATTAAACACGATAATGCTGTTCCACGGCTTGTGCGGCTTCTGAGCTCTAGGAACGCTGATATCAGAGAAAACGTAGTAAGGGCCTTAGGTAATATTGCTGGCGATGGCCCAAACAGTAGGGATGTTGTTCTGAATCATGGTGCTCTCTCGCCAACATTGTCTATGTTGGATCCAATTTCAAGATTTTCTAGTTCTAAGTTAAGGAGGACTACTATATGGGCTTTATGTAATTTCTGCCGTGGAAATCCTCCTCCACCTTTTCAACAGGTAAAACCTGCGTTGCCCGTCCTTCGACTACTAATTAACTACTTGAGTGATGAAGAAGTAGTGAAGGTTGCATGCTGGACTCTCTCTTACATTACAGCTGATGCCGACACAAATGAAAAAATCCAAGTTGTCATTCAAACAGGCGTTTGTCCACGCCTTATCCAACTTCTGCACTCGGATCCATCAGCTCCAGTTATTGAGCCTGCTCTTCGGACACTTGGAAGTGTTGTTTCCGGTGATGATAATCAGACTCAGTTTATAATTGACAGCCAAGTGCTTCCTTGTCTTCATCAACTTCTGACACAAAATTACAAAGAAAGAATCAAGGCAATAGCTTGTTGGACAATTTCAAATATCACAAGTGGCAAAGTAAGTCAAATACAGGCTGTCATTGAGGCCAATATTATTCCTCCTCTTCTTGATCTTATGCGGAATGCGGAGTTTAACATCAAGAAGGAGGCTGCTTGGGCCATCTGCAATGCCATTTATAGAGGATCTGTTGACCAGATAAAGTATGTTTTATCATGA 2637 0.4259 MSRRYKSTGVEAEQGRKRREDNLIQIRKNKRQHTLLNKRNHPLPLLHHHHIHDHAFPLSNTLEGHNNNHNIPALLQRIWSNDPAAQLEATAQFRKLLLLTLSVDSPQIDEVIEERLVSRFVEFLRYHDLPNLQNEAAWALSNITWGKSEHTRLVIKQGAVPVLVNLLHSSTIDVKEKALCCLGNIALTSRDMVLDHGALLPILSLLKHFTTLPLYLLRTATWALSNLCSGNPPPPFQQVKPALPVLGQLIHLNDEGIMSNACWALSYLSDSTIEKIQALIEEGLCPQLIHLLNSHPSPLVIEPALRTLGNIVSGNDVQTQLVIDNLILPSLQRFLTQDHKKSIKREACWIISNITAGNEDQIQAVLDANIIPALVDLIHYGEFDIKMEAAWAINNAIFGGSHWQIRFLTSQGCIEALCVLLTCPDPNVVNVCLEGLERILKVGKVDKELGLHGGVNVYAQMVEDCKGLENIENLETHSNIEIYGLAVKILGTYFVDDLQEDPPDGYACELNFGGEVREGKGLLEALPSFVFVEYYDIPDMVEGVWSDDHIVRMGATAKFREFLASRYPPPVDVVIIRAVIPRFVQFLKRNYPPRLKVNAAWCLSNIACGNSELIIKHDNAVPRLVRLLSSRNADIRENVVRALGNIAGDGPNSRDVVLNHGALSPTLSMLDPISRFSSSKLRRTTIWALCNFCRGNPPPPFQQVKPALPVLRLLINYLSDEEVVKVACWTLSYITADADTNEKIQVVIQTGVCPRLIQLLHSDPSAPVIEPALRTLGSVVSGDDNQTQFIIDSQVLPCLHQLLTQNYKERIKAIACWTISNITSGKVSQIQAVIEANIIPPLLDLMRNAEFNIKKEAAWAICNAIYRGSVDQIKYVLS. 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05242 878 Gene3D - 2 41 IPR036975 GO:0006606
Seca2g05242 878 FunFam Importin subunit alpha 66 495 - -
Seca2g05242 878 SUPERFAMILY ARM repeat 522 878 IPR016024 -
Seca2g05242 878 Pfam Importin beta binding domain 3 90 IPR002652 GO:0006606|GO:0061608
Seca2g05242 878 FunFam Importin subunit alpha 533 878 - -
Seca2g05242 878 SUPERFAMILY ARM repeat 2 497 IPR016024 -
Seca2g05242 878 PANTHER IMPORTIN ALPHA 5 497 - -
Seca2g05242 878 MobiDBLite consensus disorder prediction 1 21 - -
Seca2g05242 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 619 661 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 650 694 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 231 270 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 315 356 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 358 398 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 272 313 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 568 608 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 696 736 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 188 229 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 740 781 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 104 145 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 610 648 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 826 866 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 783 824 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 400 441 IPR000225 GO:0005515
Seca2g05242 878 SMART arm_5 147 187 IPR000225 GO:0005515
Seca2g05242 878 Pfam Atypical Arm repeat 456 499 IPR032413 -
Seca2g05242 878 Gene3D - 533 878 IPR011989 -
Seca2g05242 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 186 IPR000225 GO:0005515
Seca2g05242 878 Gene3D - 69 495 IPR011989 -
Seca2g05242 878 ProSiteProfiles IBB domain profile. 1 48 IPR002652 GO:0006606|GO:0061608
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 148 186 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 829 863 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 190 229 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 104 144 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 358 395 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 612 647 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 741 777 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 783 824 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Seca2g05242 878 Pfam Armadillo/beta-catenin-like repeat 573 607 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05242 Seca-Chr2 139039770 139047520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05242 114 381 U-box Gene Family AT1G23030 23.333 2.21e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05242 K15042 - aew:130779640 568.926