Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05233 ATGGCTAGTGGTGGTGGTGGTGGTATGGTTCCATTCTTGATAATGATTCTGGTGCAATTAGTGTATGCAGGGATGAATGTCACCTCAAAGCTTGCTATACAATCTGGCATGAATCCTCTTATCCTTGTTGCTTACAGGCAAATCTTTGCAACAATATCCATCATTCCCTTCGCTTATTGGCTGGAATGGAAATCGATTCCCAGGATGACAAAGCGCATTGTGTTTCAGATATTATTATCTTCCTTAACAGGAGTTACAGGAAACCAGGTTCTGTATTTCGTGGGGCTAAAATATTCAACCGCTACAATTGCATGTGCGCTTACCAATTTGCTCCCAGCTTTCACTTTTATCCTTGCACTCATCTTCAGGCAAGAGAATTTGAGAATCAAGAAGAAGGAAGGCATGGCAAAGGTGTTTGGGACAGTTCTGTGTGTAAGTGGAGCGGTGCTTTTATCATTTTACCATGGAAAAGTCATTGGTTTAGGCGAATCAAGAATTCACTGGAGATATGCACAGAAAATAGAAGGAACTAACTCCTCCGGTAAATCAAACTTGCTTCTAGGCCCTCTTGCCTTAATTGGTAGTGCTCTTGTTTGGTCAGCATGGTTCATAATTCAAGCTGACATGAGCAAGAATTTTCCAGTTCCTTATACGAGCACCGCCTACATGTGCTTCTTGGCAAGTTTTCATTGTGTGTTCATTGCCTTGTGTTTTGATCACAGTGCCTCAGCTTGGTCACTCCATGATGCTATGAGACTCACCTCTGCTCTTTATGCGGGAGTAATTTGTACTGGGCTAGCGTATTGTCTCATTTCATGGACTATTGAGAGGAAAGGTGCTCTTTATGTCTCTGTGTTTACCCCCTTGCAGCTTGTCCTCACCGCTATTGTCAGCTGGGCTTTGCTTCAGGAGAAATTATATGTTGGAACTGCCATTGGGTCTCTCCTCATAGTTTTTGGGCTCTATGCTGTTCTGTGGGGAAAGAGCAAAGAGGTGAATGAGAAAGAGGATATTGAAGGGACAGCAGCAGAAGCAATGAAGGATAAGGAGAAGGGTATGAAGAATGACCTGGAATTGCAACCCTATGTGCCATCCAAGGGTAACCATAATATGGGGCTGTCTTTCACCAAACTTTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTTGATGCTGCTGGTAAGACAACAATCTTGTACAAGCTCAAGCTAGGGGAGATTGTCACTACCATTCCCACTATTGGATTTAATGTGGAGACTGTAGAATATAAAAACATTAGCTTCACTGTTTGGGATGTTGGTGGCCAAGATAAGATACGTCCTCTATGGAGACACTATTTCCAAAACACACAGGGTCTTATCTTTGTTGTGGATAGCAATGATCGTGATCGTGTTGTTGAGGCTAGAGATGAGCTTCATCGAATGTTGAATGAGGATGAGTTGAGAGATGCTGTTCTCCTTGTATTTGCCAATAAGCAAGATCTCCCAAATGCCATGAATGCTGCAGAAATCACGGATAAGCTTGGTCTTCACTCTCTTCGTCAACGCCACTGGTACTCACATGCATTTTTGGTATATCCAGAGCACATGTGCTACCTCTGGGGAAGGACTCTACGAGGGACTGGATTGGCTGTCCAACAATATAGCAAATAA 1668 0.4323 MASGGGGGMVPFLIMILVQLVYAGMNVTSKLAIQSGMNPLILVAYRQIFATISIIPFAYWLEWKSIPRMTKRIVFQILLSSLTGVTGNQVLYFVGLKYSTATIACALTNLLPAFTFILALIFRQENLRIKKKEGMAKVFGTVLCVSGAVLLSFYHGKVIGLGESRIHWRYAQKIEGTNSSGKSNLLLGPLALIGSALVWSAWFIIQADMSKNFPVPYTSTAYMCFLASFHCVFIALCFDHSASAWSLHDAMRLTSALYAGVICTGLAYCLISWTIERKGALYVSVFTPLQLVLTAIVSWALLQEKLYVGTAIGSLLIVFGLYAVLWGKSKEVNEKEDIEGTAAEAMKDKEKGMKNDLELQPYVPSKGNHNMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYSHAFLVYPEHMCYLWGRTLRGTGLAVQQYSK. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05233 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 526 IPR027417 -
Seca2g05233 555 CDD Arf1_5_like 388 524 IPR045872 GO:0003924
Seca2g05233 555 SMART rab_sub_5 388 521 - -
Seca2g05233 555 SMART sar_sub_1 371 554 IPR006689 GO:0003924|GO:0005525
Seca2g05233 555 SMART arf_sub_2 371 552 - -
Seca2g05233 555 FunFam ADP-ribosylation factor 1 372 538 - -
Seca2g05233 555 Pfam ADP-ribosylation factor family 375 524 IPR006689 GO:0003924|GO:0005525
Seca2g05233 555 Gene3D - 370 535 IPR027417 -
Seca2g05233 555 PANTHER WAT1-RELATED PROTEIN 10 336 IPR030184 GO:0016020|GO:0022857
Seca2g05233 555 NCBIfam small GTP-binding protein domain 386 508 IPR005225 GO:0005525
Seca2g05233 555 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020
Seca2g05233 555 Pfam EamA-like transporter family 12 152 IPR000620 GO:0016020
Seca2g05233 555 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 153 - -
Seca2g05233 555 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 330 - -
Seca2g05233 555 PRINTS GTP-binding SAR1 protein signature 417 441 IPR006689 GO:0003924|GO:0005525
Seca2g05233 555 PRINTS GTP-binding SAR1 protein signature 389 412 IPR006689 GO:0003924|GO:0005525
Seca2g05233 555 PRINTS GTP-binding SAR1 protein signature 489 510 IPR006689 GO:0003924|GO:0005525
Seca2g05233 555 PRINTS GTP-binding SAR1 protein signature 444 469 IPR006689 GO:0003924|GO:0005525
Seca2g05233 555 ProSiteProfiles small GTPase Arf family profile. 381 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05233 Seca-Chr2 138822770 138833450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05233 9 368 Nodulin-like Gene Family AT1G09380 57.895 1.00e-142 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05233 - - gmx:100798142 573.548