Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05226 ATGGCAGAACGGGTTGTTGGGCATGGATCATTTGGGGTTGTTTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTTGCTATTAAAAAGGTACTTCAAGACAAGAGGTATAAGAACCGGGAGCTGCAAACAATGCGTCTTCTTGACCACCCAAATGTTGTCTGTTTGAAGCATTGTTTCTTTTCGACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTTATCGCGTGATCAAACATTACAACAAGATGAACCAGCGCATGCCACTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTAGTTAATCCCCATACCCACCAAGTTAAATTGTGTGACTTTGGAAGTGCAAAAGTCTTGGTCAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAACTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTTGGTCTGTAGGTTGTGTATTGGCTGAACTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCTAACTACACAGAATTTAAATTCCCACATATTAAAGCACATCCATGGCACAAGATCTTTCATAAGCGCATGCCACCAGAAGCTGTTGATTTGGTATCAAGACTACTGCAATACTCCCCTAACCTGCGGTGCAATGCTTTAGATGCCTTGACACATCCCTTCTTTGATGAGCTTCGTGATCCAAACACCCGCTTGCCAAGTGGTCGTTTCCTTCCACCATTATTCAATTTCAAATCTCATGAACTGAAGGGAGTCCCGGTTGAGACTTTGATGAAATTGATTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1011 0.4194 MAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEYVPETVYRVIKHYNKMNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPHIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCNALDALTHPFFDELRDPNTRLPSGRFLPPLFNFKSHELKGVPVETLMKLIPEHARKQCPFLGL. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05226 336 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
Seca2g05226 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Seca2g05226 336 SMART serkin_6 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05226 336 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 330 - -
Seca2g05226 336 FunFam Shaggy-related protein kinase kappa 80 328 - -
Seca2g05226 336 ProSitePatterns Protein kinases ATP-binding region signature. 6 30 IPR017441 GO:0005524
Seca2g05226 336 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05226 336 Gene3D Transferase(Phosphotransferase) domain 1 80 328 - -
Seca2g05226 336 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca2g05226 336 Pfam Protein kinase domain 3 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05226 336 CDD STKc_GSK3 3 287 IPR039192 -
Seca2g05226 336 FunFam Glycogen synthase kinase-3 beta 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05226 Seca-Chr2 138774877 138778811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05226 4 289 MAP Kinase Gene Family AT3G59790 34.694 1.51e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca2g05226 Pkinase 4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05226 K00924 - gmx:100795659 683.715