LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05222	ATGGGTTCTAATCTTAATGCTGAATTATCCAAGAAAACTAGCATTTTTAGTCTCAAGGTTTGGGAAATAATTGCAATTGCTGTTGGATTGACCATTATAATTATCCTCTCTGTGCTATCACTTTGCCTTACTTCAAGGAAGAAATCTAGAAAAGCCAAGGACAGAATTCCTGTTAGTCAGATACCAACCGTCTCAAAGGAAATCAAGGAAGTGAGGGTTGAGCAAGTATCAACAAATGGATTTACTCCTCGTGATGGAATATTGCTTACCATTCATGATAAATCCAGTGACAAGGAATCAGACAAAGTTATGGTTCATTTAGGTGTGGGGAAGATGATGAATGGGGATAGCAGCAGTCATTCTGATTCTTTTCATCACATGGAGAAAGATGGAGGTGGTTCACTCTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACAGTTGCAGTGTACAAGCACTCTTCTTCATACCCTATAACAGCTCCTTCACCTCTGAATGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACAAACCGTTTTGCCAAAGAAAATGTCCTTGGTGAAGGTGGGTATGGAGTTGTTTATAGGGGACAATTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGCCTTTTGGGATACTGCATTGAGGGAACTCACAGGATGTTAGTCTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATATCTTACCTGGGAAGCGCGTATCAAGATTCTCCTTGGCACAGCGAAAGCGCTTGCATATTTGCATGAAGCAATAGAGCCAAAGGTGGTACACCGGGATATCAAGTCAAGCAACATATTAATTGATGATGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTCATGTCACAACGCGAGTTATGGGTACCTTCGGATACGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAGAAGAGTGATGTTTATAGTTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGATCCAGTTGACTATGGTCGTCCAGCAGCTGAAGTGAGTAAACTTACTTTTATATTGGGTACAAAATCCAGCTTGAAGTATGTGTGTTTGTTCTTGCAAATTCACCAAATAATCCTGAAGTATTATCTGTGA	1302	0.414	MGSNLNAELSKKTSIFSLKVWEIIAIAVGLTIIIILSVLSLCLTSRKKSRKAKDRIPVSQIPTVSKEIKEVRVEQVSTNGFTPRDGILLTIHDKSSDKESDKVMVHLGVGKMMNGDSSSHSDSFHHMEKDGGGSLSQSGEEGSSGTVAVYKHSSSYPITAPSPLNGLPEFSHLGWGHWFTLRDLELATNRFAKENVLGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPAAEVSKLTFILGTKSSLKYVCLFLQIHQIILKYYL.	434

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca2g05222	433	FunFam	Putative receptor-like serine/threonine-protein kinase	267	417	-	-
Seca2g05222	433	ProSiteProfiles	Protein kinase domain profile.	191	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca2g05222	433	ProSitePatterns	Protein kinases ATP-binding region signature.	197	220	IPR017441	GO:0005524
Seca2g05222	433	Gene3D	Transferase(Phosphotransferase) domain 1	267	418	-	-
Seca2g05222	433	Gene3D	Phosphorylase Kinase; domain 1	173	266	-	-
Seca2g05222	433	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	313	325	IPR008271	GO:0004672\|GO:0006468
Seca2g05222	433	PANTHER	OS01G0323000 PROTEIN	4	407	-	-
Seca2g05222	433	SMART	serkin_6	191	428	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca2g05222	433	CDD	STKc_IRAK	197	406	-	-
Seca2g05222	433	SUPERFAMILY	Protein kinase-like (PK-like)	165	407	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05222	Seca-Chr2	138719605	138724296	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05222	168	403	Trihelix Transcription Factor Family	AT1G70460	54.430	3.20e-81	263

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Seca2g05222		Pkinase	2e-45	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05222	-		-	gmx:100787014	715.687

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