Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05222 ATGGGTTCTAATCTTAATGCTGAATTATCCAAGAAAACTAGCATTTTTAGTCTCAAGGTTTGGGAAATAATTGCAATTGCTGTTGGATTGACCATTATAATTATCCTCTCTGTGCTATCACTTTGCCTTACTTCAAGGAAGAAATCTAGAAAAGCCAAGGACAGAATTCCTGTTAGTCAGATACCAACCGTCTCAAAGGAAATCAAGGAAGTGAGGGTTGAGCAAGTATCAACAAATGGATTTACTCCTCGTGATGGAATATTGCTTACCATTCATGATAAATCCAGTGACAAGGAATCAGACAAAGTTATGGTTCATTTAGGTGTGGGGAAGATGATGAATGGGGATAGCAGCAGTCATTCTGATTCTTTTCATCACATGGAGAAAGATGGAGGTGGTTCACTCTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACAGTTGCAGTGTACAAGCACTCTTCTTCATACCCTATAACAGCTCCTTCACCTCTGAATGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACAAACCGTTTTGCCAAAGAAAATGTCCTTGGTGAAGGTGGGTATGGAGTTGTTTATAGGGGACAATTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGCCTTTTGGGATACTGCATTGAGGGAACTCACAGGATGTTAGTCTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATATCTTACCTGGGAAGCGCGTATCAAGATTCTCCTTGGCACAGCGAAAGCGCTTGCATATTTGCATGAAGCAATAGAGCCAAAGGTGGTACACCGGGATATCAAGTCAAGCAACATATTAATTGATGATGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTCATGTCACAACGCGAGTTATGGGTACCTTCGGATACGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAGAAGAGTGATGTTTATAGTTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGATCCAGTTGACTATGGTCGTCCAGCAGCTGAAGTGAGTAAACTTACTTTTATATTGGGTACAAAATCCAGCTTGAAGTATGTGTGTTTGTTCTTGCAAATTCACCAAATAATCCTGAAGTATTATCTGTGA 1302 0.414 MGSNLNAELSKKTSIFSLKVWEIIAIAVGLTIIIILSVLSLCLTSRKKSRKAKDRIPVSQIPTVSKEIKEVRVEQVSTNGFTPRDGILLTIHDKSSDKESDKVMVHLGVGKMMNGDSSSHSDSFHHMEKDGGGSLSQSGEEGSSGTVAVYKHSSSYPITAPSPLNGLPEFSHLGWGHWFTLRDLELATNRFAKENVLGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPAAEVSKLTFILGTKSSLKYVCLFLQIHQIILKYYL. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05222 433 FunFam Putative receptor-like serine/threonine-protein kinase 267 417 - -
Seca2g05222 433 ProSiteProfiles Protein kinase domain profile. 191 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05222 433 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Seca2g05222 433 Gene3D Transferase(Phosphotransferase) domain 1 267 418 - -
Seca2g05222 433 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Seca2g05222 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Seca2g05222 433 PANTHER OS01G0323000 PROTEIN 4 407 - -
Seca2g05222 433 SMART serkin_6 191 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05222 433 CDD STKc_IRAK 197 406 - -
Seca2g05222 433 SUPERFAMILY Protein kinase-like (PK-like) 165 407 IPR011009 -
Seca2g05222 433 FunFam Putative receptor-like protein kinase 173 266 - -
Seca2g05222 433 Pfam Protein kinase domain 192 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05222 433 MobiDBLite consensus disorder prediction 116 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05222 Seca-Chr2 138719605 138724296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05222 168 403 Trihelix Transcription Factor Family AT1G70460 54.430 3.20e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca2g05222 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05222 - - gmx:100787014 715.687