Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05219 ATGGGCGGAGGTGGAGCGACACCTAACACAGAGGCACAGTACTCGACGGCGAAGATTTCGGTGTGGTGGGATATAGAGAACTGTCATGTCCCCAAGGGTTCGGATCCCCATGCCATCGCACAGAATATTAGTTCAGCACTGGTTCGCATGAACTACTGTGGCCCCGTTTCCATCTCCGCCTACGGCGACACCACTCGCATCACCGCCTCTGTACAGCACGCCCTTTCCAGCACCGGAATCTCCCTCAATCATGTTCCTGCTGGTGTGAAAGACGCAAGCGACAAGAAAATCCTTGTCGACATGCTGTTCTGGGCAGTGGACAATCCTGCACCTGCTAATTACTTACTAATTTCGGGTGATCGAGACTTCTCTAACGCTCTCCATCAACTGCGGATGAGGAGATATAATATTCTACTTGCACAACCTCAGAAAGCATCTGCACCCCTAGTTGCAGCTGCTAAGAGTGTATGGCTTTGGACTAGTCTCTTAGCTGGAGGACCTCCTTTAACTAATGGTGAATCACAACAACTTGGTAATAATGGCCTCTTATCATCTTCTGACACCTTACAAATTCCAGTCACAAATGCTGCTCAGATACAGCAGCAAGTGGATTCCTATTCTGAAGTTCAAAATGCCGCACATGGAAATTCAAAATTTCCAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGAAAATCAACTTGGAGAAACCCAAGTCAACCAAATGGACCCAAACCAATGAATCCACCACCAGTTGGATTTCAAGATAATCATAATAACATAAACTCTTATCGACCTGGCAGCTATAATCCAAATGTTCCTCTAAGCGGACCTGCTACAAATTTTGTTCGTGGCAATACTGATCAGTTATGGAGCAATAATGGTAATCTACAGGGCAATCATCAACATCCTTATTCCCAGCCATTAAGACCAAACAATTATCCGTTGCAACCTCCCTTTGCACCTAGTAATACATATGCTCCAAATTCCCGTAATTTTGCAACTTCACCGGTGCCACCTAGGACTGGTGGTCCCAACTTCACTACAGGACCACTCACAAATGGGCCAGATATTGGTAATCTGAACATTTCTGGATATCCAAATACTGTTCATAATCCGCGTACCACTCTGCAACGGAGTGGAGAGTTGAAACCAAATCACAACAGTAATGCGCAACGGAGTGGAGAGTTGAAACCAAATCACAACAGTAATGCTCCGCCTCCTGTAAGATCAACTGATGATAAAAATCAACCTACACCATTGGCAGCAACGGGTAATAATAACCCTCCTGCTAATGGTATGTGGGGATCTCCAGGATGTCCTAAACCTTCCGAATTTGTACAAGGCCTTATAGGAGTTGTTTTACTTGCCTTGAACTCGCTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGTTATGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAGTGTGCTATTGAACAGCAGATGGTGGTGAAACAGAATTTAGGCGCTTTGCCTTTGTATGTTGGTAAGAATGATAAACTTTGGAAGTGTGTAAATCCTTTAGGTGGGAATCCTAAGCAGCACTCAAAAGAAACATGGGACGAAATTCAAAATTTTTTAACAACTTCTGCTGGAAGATCGGCAATAATGGCTACACAGTGCAAGTGA 1689 0.4446 MGGGGATPNTEAQYSTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLTNGESQQLGNNGLLSSSDTLQIPVTNAAQIQQQVDSYSEVQNAAHGNSKFPNGGRGFDSRYQGKSTWRNPSQPNGPKPMNPPPVGFQDNHNNINSYRPGSYNPNVPLSGPATNFVRGNTDQLWSNNGNLQGNHQHPYSQPLRPNNYPLQPPFAPSNTYAPNSRNFATSPVPPRTGGPNFTTGPLTNGPDIGNLNISGYPNTVHNPRTTLQRSGELKPNHNSNAQRSGELKPNHNSNAPPPVRSTDDKNQPTPLAATGNNNPPANGMWGSPGCPKPSEFVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALECAIEQQMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQHSKETWDEIQNFLTTSAGRSAIMATQCK. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05219 562 Pfam NYN domain 18 154 IPR021139 GO:0004540
Seca2g05219 562 CDD PIN_limkain_b1_N_like 18 142 - -
Seca2g05219 562 MobiDBLite consensus disorder prediction 254 311 - -
Seca2g05219 562 MobiDBLite consensus disorder prediction 208 441 - -
Seca2g05219 562 PANTHER LIMKAIN B LKAP 14 505 IPR024768 GO:0005777|GO:0010468
Seca2g05219 562 MobiDBLite consensus disorder prediction 324 434 - -
Seca2g05219 562 Gene3D - 10 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05219 Seca-Chr2 138667736 138671979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05219 11 198 C2H2 Transcription Factor Family AT5G61190 71.579 1.24e-85 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05219 - - gmx:100794608 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05219 2 138667736 138671979 Seca2g05219 2 138667736 138671979 ECH