Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05214 ATGCACACAGTGAATATATCTTTACATCTGATGTATGCTTCCTGTTCCTTAGGTAGATACAACATGGATTATCGATGGACCAGTGGTAGGCAGGAATCTGGTGGCCGTGATAGGAGGCAATATAAAAAGGAACAGGCATATGAAGATTCCCTCATTGAGGATTTGTCAGAGGATTTTCGTTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAATGTAGAGCAAGCATCACTGGACACACAGTTAACATCATCTAATATTGGCTTTAAACTTCTCCAGAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCATTGAACCAATAAAATCTGGGATTAGAGATCCAAGATTGGGGGTTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATATCCAACGAAGAAAACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGCGAGGAAGCGGGAGGTCTTGAGAATTTCCTGCAGTTTTTATTACCTGGTGGCTTCTTCTGCCTGCTTCGTGCACATTATGAAAATTCAGGTTTTAGCTGAACGTGAGCAAAAAATTCAAACCGAGGTGAAAGAAATCCGAAAGGTGTTTTACTGTGACCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCATATGATCACAATCACAGGAAGCGTTTCAAACAAATGAAGGAAATGCATGGTAGTAGTAGTCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAGAGAAATGGCTAAGTTCGCTCAAATTGCTGATGCTCAAAAGCAGCAAAGGCTTCAACTGCAACAAGAGTCTGGATCAGCGACAGTTTCCACTGAATCTAGAACTGCCACTGCACTTACAGATCAGGAGCAGCGGAATACTTTGAAGTTTGGGTTTTCTTCTAAAGGAAGTGCTTCCAAGGTATGTCCACCTGGTTATCAAAACATTGTTGGTGTCAAGAAGCAAAATGTTGTGAAGAAGCAAAATGTTCCAATATCCTCTATATTCAGTAATGACAGTGATGAAGAGTGA 1074 0.4153 MHTVNISLHLMYASCSLGRYNMDYRWTSGRQESGGRDRRQYKKEQAYEDSLIEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRRKLDVELEETEEHARKREVLRISCSFYYLVASSACFVHIMKIQVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQQESGSATVSTESRTATALTDQEQRNTLKFGFSSKGSASKVCPPGYQNIVGVKKQNVVKKQNVPISSIFSNDSDEE. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05214 357 SUPERFAMILY beta-beta-alpha zinc fingers 205 241 IPR036236 -
Seca2g05214 357 SMART G-patch_5 85 130 IPR000467 GO:0003676
Seca2g05214 357 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 22 357 - -
Seca2g05214 357 Pfam Zinc-finger double-stranded RNA-binding 207 234 IPR022755 -
Seca2g05214 357 ProSiteProfiles G-patch domain profile. 87 132 IPR000467 GO:0003676
Seca2g05214 357 MobiDBLite consensus disorder prediction 278 303 - -
Seca2g05214 357 Pfam G-patch domain 88 128 IPR000467 GO:0003676
Seca2g05214 357 ProSitePatterns Zinc finger C2H2 type domain signature. 209 231 IPR013087 -
Seca2g05214 357 MobiDBLite consensus disorder prediction 238 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05214 Seca-Chr2 138637157 138640728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05214 22 357 C2H2 Transcription Factor Family AT5G26610 58.112 3.38e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05214 - - gsj:114407513 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05214 2 138637157 138640728 Seca2g05214 2 138637157 138640728 ECH