Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05210 ATGCCTCTGCGTGAGTTATACCGCATGGTTAATGGGAAAGTTGTTGATCACAAAGAGATGAACAACAACACAAGTGCAACTGATCAATCTTCTGTACCCAAGAATGATTTGTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAGTCCAGTAGAGCTAGAAAGAGTCCAACTTGTAAGAGTTTGCCATCTCACTGTATACCATCTCACAGTCCAAGGGGTCAAGATAAAGATTTAGGATATGCTAATGAAACAAATACAACTACAAGGATAGGAAAATTTGTGGATTTAGATACTGGATTGAATGAAATTACAAGGCCAGTCCTTTCAAGTGAAGTGGATTTAAGTCATGATGAAGAGGTGATACCTTGGTTGAATTATGGAATGGATGACTCTTTGCAACATGAATATAGTTCTGAGTTCTTACATGAATGTTCTGGGGTCAGCATGAATGAATTCCCTGCCTCAAATAAATTTTCTTTACTAGATAGAAGAAGTAGTTATAATCAGGTATTTAGGGACACTCAGAAACACTCTTCACATCATGTTTTAAGTTCAGAACATGGAATCCTTTCTAAGGGCTGTTCAACTGTAGCTGGAGAAGTTGAGACCCCAGGACCTAAAGCTAGCACAAGTCATTTATACCCTCCATCAATTTTGCATCAATGTCAAACATCATTTGCATCTGTTAGACCCAAAGAATCAGATATAGCTGAAAATAATACAAGTAATGCAACCCAGCATGCACCTTGTGGGGAAATCACACAGATTCTATCTGCCTCTAGTGGAAAGATGGAGAGGAGAGATCCAATTATGTCTAGCAATAGTTCGACCATAATGAATTTCTCCCATTTTGCAAAACCTGCTGCTGTTGTGAAAGCTAATCTTCAGAACATGGCCTTGACTTCTGGTTTGTCTTCACCAAGATCAGAAAGTGTGGGAATAAAGAATAAAGGTGCTGCTGCAACTAGAATCAATGCTCCTGAATCAACAAAAGTTGATTTAAGCGGCGAATGTCCAAAGAAATCAGCCATACACAGTCAGCAGGTTATGGAGCCATCCAAGGTTGATTTGAAACCGTTGGAGCCAAAATCTCTTGAGCAGGATGCTGCTGTTGCTGCTTGCAAAGAAGATGTGTCTAAGATTGATCAAACTTCTAATAAAGTTATTGGTGAAAGTGGCAGAAAAGGTTTGGAAGCTGTTGAAAGAAGCATGGAACCAGCAGTAGTATCTTCCTCTGTTTGCTCTGCCAATGGTGCAGGGAGAGGTTCAGATGACCCAGATCAAAGTTTGAAGAGAAAAAGTCATGACACTGAGGACTCTGAGTGGCATAGTGAAGATGTTGAGGAAGAATCAGTGGGTCTTAAAAAGGCAGCTCGTGCACGAGGGGGTATGGGTTCCAAGAGAAACCGCTCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCTATGCTTGATGAGGCTATTGAGTATCTTAAAACACTTCAATTCCAACTTCAAATCATGTCAATGGGAGGTGGTTTATATATGCCTACAATGATGTTACCTCCAGGAATGCAGCACATGCATGCACCACATATGTCTCCTTTTTCACCTATGGGTGTTGGCATGCAAATGGGGTTGGGAGTGGGTTATGGAATGGGCAGGCCTGACATTAATGATGGATCTTCTAGATTCCCAATGGTTCAAATGCCCCAAATGCAAGGAACTCATCTACATACATCTGGATCCACTGCTTTGCATGGGATGGCAAGATCAAATCCTCAAGTGTTTGGACTTCCTGGCCAGGGACTCCCCATGTCAATGCCATGTGCTCCAATATTTTCTTTTCCCGGACCAGGAGAGCCTCCTATGAACCCATCAGCTGTAGGAGTAAATGCTTGTGGAACATCAGGACTTAGGGAAACTGTGGAATCAGCTTCAGCCTCTACCTTAAAGGATCCAATGCCAAATGTGAACTCACAAGCTATACAAAATGCTGGTGGCTGTAACCCAACAAATCAGATGTCTACACAGTGTGAAGCAGCAACTGGTGGATTTGAACACTCAACTTTGGTACTTAATGGTCTTGCCTCTTCAGTGAATGACAGAGGAGCTGTTAAGTCGGGTAAAGAAGACAACCATGTGAATGATAAATCTCATGAGTTATGA 2235 0.4174 MPLRELYRMVNGKVVDHKEMNNNTSATDQSSVPKNDLFELVWENGQISMQGQSSRARKSPTCKSLPSHCIPSHSPRGQDKDLGYANETNTTTRIGKFVDLDTGLNEITRPVLSSEVDLSHDEEVIPWLNYGMDDSLQHEYSSEFLHECSGVSMNEFPASNKFSLLDRRSSYNQVFRDTQKHSSHHVLSSEHGILSKGCSTVAGEVETPGPKASTSHLYPPSILHQCQTSFASVRPKESDIAENNTSNATQHAPCGEITQILSASSGKMERRDPIMSSNSSTIMNFSHFAKPAAVVKANLQNMALTSGLSSPRSESVGIKNKGAAATRINAPESTKVDLSGECPKKSAIHSQQVMEPSKVDLKPLEPKSLEQDAAVAACKEDVSKIDQTSNKVIGESGRKGLEAVERSMEPAVVSSSVCSANGAGRGSDDPDQSLKRKSHDTEDSEWHSEDVEEESVGLKKAARARGGMGSKRNRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLKTLQFQLQIMSMGGGLYMPTMMLPPGMQHMHAPHMSPFSPMGVGMQMGLGVGYGMGRPDINDGSSRFPMVQMPQMQGTHLHTSGSTALHGMARSNPQVFGLPGQGLPMSMPCAPIFSFPGPGEPPMNPSAVGVNACGTSGLRETVESASASTLKDPMPNVNSQAIQNAGGCNPTNQMSTQCEAATGGFEHSTLVLNGLASSVNDRGAVKSGKEDNHVNDKSHEL. 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05210 744 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 474 523 IPR011598 GO:0046983
Seca2g05210 744 MobiDBLite consensus disorder prediction 49 68 - -
Seca2g05210 744 FunFam Basic helix-loop-helix transcription factor 469 532 - -
Seca2g05210 744 MobiDBLite consensus disorder prediction 405 489 - -
Seca2g05210 744 Gene3D - 469 531 IPR036638 GO:0046983
Seca2g05210 744 MobiDBLite consensus disorder prediction 727 744 - -
Seca2g05210 744 PANTHER TRANSCRIPTION FACTOR PIF3 1 698 IPR044273 GO:0003700|GO:0006355
Seca2g05210 744 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 533 IPR036638 GO:0046983
Seca2g05210 744 CDD bHLH_AtPIF_like 474 536 IPR047265 -
Seca2g05210 744 MobiDBLite consensus disorder prediction 429 460 - -
Seca2g05210 744 SMART finulus 480 529 IPR011598 GO:0046983
Seca2g05210 744 MobiDBLite consensus disorder prediction 723 744 - -
Seca2g05210 744 MobiDBLite consensus disorder prediction 49 84 - -
Seca2g05210 744 MobiDBLite consensus disorder prediction 470 489 - -
Seca2g05210 744 Pfam Helix-loop-helix DNA-binding domain 478 524 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05210 Seca-Chr2 138585080 138589911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05210 1 596 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.154 1.09e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g05210 HLH 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05210 K12126 - gmx:100794974 856.67