Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05208 ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGTTCCGTTCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGATTGAGATGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCTCAACAGGAAGAGGATTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCTCAGATTGCAGCTCAGTTACCAGGAAGAACTGACAATGAGATAAAAAATCTCTGGAATTCTTGCCTCAAGAAGAGGCTTAGACAAAGAGGCATTGACCCAAACACCCACCAACCACTCTCTGAGGTTGAGAAAGACAAGGACAAGCCACTCACAGCTGACAAAAGCAACAATCTGCAGAAAGGATCCAATGAGGTGAGTCATGTTGTTGAGGCATCAAAACCAAAGCCAAATCCTCCTATGCCTATGGAAAGATACCCCCTTGAAATCTCTTCTACCTCCAAGATTAGCAGCAATTTAACACCTACACAGGAATTATTCTTAGATAATAACAGGTTTAGTACCTGTCATGACAGCTCCATGACTAGTTGCAGACCTTCTGATATGGTGGGAGGATATTTCCCTTTCCAACAGCTAAACTTTGGAACAAACATGGGGCTCACTACTGCAAATCCCAACAGCACCTCCTCATCACTTTGCTTCATGCCACCAGGTTCAACTTCCTCCCAAATGATGTCAGACCTCAATTCAACTATGCTCCATTCTGTTTTCCCAAAACATGTGGTAAAGCCAACTGTCAGCCTCCAATCTTCCATATCCTCTGGAGATATAGAAGGGGTACAGAACTGGGAAGGCAGTACCTTCAGTAACAAAAGCAATGGAAGCAGTAACAGCAGCAATAATGCCAATATCCAATTACAAAACAGCACTAACTTTCTTGACAGCAGCACCATAACATGGGGGCTTCCTGCAGAGTCTGTCAAACCAGATAAAGATGGTCATGGTCATGTAGCTTTACAAGGTGTAACAGAACAAGAAGACATTAAATGGTCTGAGTATCTGAACACTCCGTTTTTTCTGGGAAACACAGTGCATCAGCATCAGCATCAGGGTGGTACCACTACTATTCAATGTATCTACAGTAGTGATGAGGTTAAACCAGAAACAGCTGGTAGCTTCATTACAGATGAATCAAGTACCACTTGGCATCATCATAGCCATATTCAACCTTCTGATATATATAGCAAAGATCTACAGAGATTTTCAGTGGCTTTTGGACAAACCCTTTAG 1338 0.432 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQRGIDPNTHQPLSEVEKDKDKPLTADKSNNLQKGSNEVSHVVEASKPKPNPPMPMERYPLEISSTSKISSNLTPTQELFLDNNRFSTCHDSSMTSCRPSDMVGGYFPFQQLNFGTNMGLTTANPNSTSSSLCFMPPGSTSSQMMSDLNSTMLHSVFPKHVVKPTVSLQSSISSGDIEGVQNWEGSTFSNKSNGSSNSSNNANIQLQNSTNFLDSSTITWGLPAESVKPDKDGHGHVALQGVTEQEDIKWSEYLNTPFFLGNTVHQHQHQGGTTTIQCIYSSDEVKPETAGSFITDESSTTWHHHSHIQPSDIYSKDLQRFSVAFGQTL. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05208 445 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g05208 445 MobiDBLite consensus disorder prediction 119 173 - -
Seca2g05208 445 FunFam MYB transcription factor 68 140 - -
Seca2g05208 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca2g05208 445 MobiDBLite consensus disorder prediction 128 143 - -
Seca2g05208 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca2g05208 445 Gene3D - 11 67 - -
Seca2g05208 445 CDD SANT 17 61 IPR001005 -
Seca2g05208 445 PANTHER MYB DOMAIN PROTEIN 55 1 330 - -
Seca2g05208 445 MobiDBLite consensus disorder prediction 299 319 - -
Seca2g05208 445 SMART sant 66 114 IPR001005 -
Seca2g05208 445 SMART sant 13 63 IPR001005 -
Seca2g05208 445 Gene3D - 68 146 - -
Seca2g05208 445 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g05208 445 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca2g05208 445 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca2g05208 445 CDD SANT 69 109 IPR001005 -
Seca2g05208 445 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g05208 445 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05208 Seca-Chr2 138568727 138570491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05208 1 445 MYB Transcription Factor Family AT1G09540 46.336 1.30e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g05208 Myb_DNA-binding 3e-15 CL0123