Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05203 ATGATTCCAAGTGCAGTTCAGGTGACAATGTCCGCCTCAAGGCCTAGCCAATCATCCAGCAATAATTCAGGTAGATCAAGACACAGTGCTAGGATTATTGCTCAGACCACTTTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCCGGTAGTTCCTTTGACTACTCCAATTCGGTGCGATTTTCTCCTGGTACTGATACAGCTAGTGGAGACCATCAAGCAAGTTCTGACAGAGTAACAATTGCTTACCTCCATCAGATACAGAAAGGGAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCTTTAGATGAGAAAACGCGCAAAGTCATTGCTTATAGTGAGAATGCACCTGAAATGCTGACTATGGTTAGTCATGCTGTCCCCAATGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGATCTATTTTTACCTCCCAAAGTGCTTCTGCATTTCAGAAGGCACTAGGATGTGGGGAGGTTTCACTTCTTAACCCCATCCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTGACTGGTAGTTTGATTGTTGATTTTGAGCCAGTTAAGCCTCATGAACATGGAGCTCCCACAACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCAACAAAATCAATAAACCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAACACTCTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGAGTAATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGGTCAAAAAGCCAGGCCTAGAGCCTTATCTGGGTTTGCACTATCCAGCCACTGATGTTCCCCAGGCTACACGCTTTTTATTTATGAAGAACAAGGTCCGTATAATAGTTGATTGTAGTGCAAAGCATGTAAAGGTGATTCAAGACAAAAATATTCCATTTGATTTAACTTTGTGTGGATCAACCTTAAGGGCTCCTCATAGTTGCCATTTGCAATACATGGAGAACATGAAAGCAAGTGCTTCCCTGGTTATGGCAGTTGTGGTCAATGACAGCAATGAAGACGGTGATAGCTCTGATGCTGTTCAACCACAAAAGAGAAAGAGGCTCTGGGGTTTAGTTGTTTGCCATCATATTACCCCCAAGTTTGTTCCCTTTCCTCTTAGATATGCTTGTGAATTTCTGGCACAAGTATTTGCCATCCATGTTAACAAAGAAATAGAGTTAGAATATCAGGTTATTGAGAGGAATATCCTGCGCACCCAAACCCTCTTGTGTGATATGTTGATGCGAGATGCACCCCTAGGTATTATATCACAGAGCCCTAATATAATGGATCTTGTGAAATGTGATGGAGCAGCTCTCTTGTATAAGAACAATGTATGGAGATTAGGGGTAGCACCGAGTGAATCGCAGATACGGGAGATTGCTTTATGGCTCTCTGAGTGCCATAAGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGGCTGCTGCTCTTGGTGATATTATATGTGGAATGGCATCTGTGAGAATATCTTCAAATGACATAGTTTTTTGGTTTCGATCACACACTGCTGCAGAAATCAGATGGAGTGGTGCAAAGCATGAACCTGGTGATAAGGATGATGGTAGGAAGATGCATCCAAGATCGTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACGAGGAGCTTACCATGGAAGGACTACGAAATGGATGCTATTCATTCATTGCAGCTGATACTGAGAAATGCATTCAAAGATACAGAGATTATGGATATAAGCACAAATGCTATCAATACAAGACTAAGTGATTTGAAGATTGAGGGGATGCAAGAGCTGGAAGCAGTAACAAATGAGATGGTTAGGTTAATTGAAACAGCAACGGTGCCAATTTTTGCAGTTGATGTAGATGGGATGGTCAATGGATGGAATGCAAAATGTTCTGAGTTGACAGGTCTTCCAGTTGAGGAAGCTGTTGGGAAACATTTACTCATGCTTGTTGACGATTTTTCAACAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAAGAAGAGAAGAATGTCCAATTTGAGATGAAAACACATGATTTGAAGATTGATTCTGGTCCTATCTGCTTGGTTGTTAATGCTTGTGTAAGCAGGGATCTTCAACATAATGTTGTGGGAGTTTGTTTTGTAGCCCAAGATATAACTATTCAGAAGACATTCATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAACCCAAACCCGTTGATCCCCCCAATATTTGGCACCGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGACTAAATTAACTGGATGGAAGCGAGAGAAGGTGATGAATAAAATGCTTTTAGGAGAGGTTTTTGGGACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAATAAAGCGATGACTGGTTTGGAAACAGAGAAAGTTTCTTTCGGTTTCTTCACTCGGAATGGGAAGTATGTAGAATGCCTTCTTTCTATGAGTACAAAAGTGGACATAGAGGGTGTAGTTACTGGAGTCTTCTGCTTCTTGCAGCTCGCTAGTCCAGAGCTGCAACAAGCATTACATATTCAGCACCTATCTGAACAAACTGCCTTGAAGAGACTAAAAGCTTTAACTTACATGAAAAGGCAAATCCGAAACCCTTTATGTGGAATTGTGTTCTCCTGGAAACTGTTAGAGGGTACTGAGTTGGGAACTGATCAAAAACAACTTCTGCATACTGGCACTCAGTGCCAACGCCAGCTTAGCAAAATTCTGGATGACTCAGATCTTGACAGCATCATTGATGGCTACTTGGATTTGGAGATGGTTGAATTCACTCTGCAGGAAGTCTTGGTTGCCTCCCTAAGTCAAGTTATGACAAAGAGTAGTGCAAAGGGTATCCAAGTAGTCAGTGATGTTGCAGAGGAGATCACAACAGAAACCTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTATCTGACTTTTTATTGATTTCCATCAATTCTACACCAACTGGAGGTCAGGTTGTTGTATCTGCCTCTTTAACCAAAGATCGTCTAGGGAAATTAGTCCAACTTGCTTATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTACCAGAAGCATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAAGAGGGCATTAGCCTGCTCATCAGCAGAAAGCTGCTAAAGCACATGAGTGGAGATGTACGTTATATAAGAGAATCAGGCAAATCATCTTTCATCTTGTCTGTTGAACTTGCCATGTCTCATAAATTGGGGGCTTAA 3420 0.4213 MIPSAVQVTMSASRPSQSSSNNSGRSRHSARIIAQTTLDAKLHATFEESGSSFDYSNSVRFSPGTDTASGDHQASSDRVTIAYLHQIQKGKLIQPFGCLLALDEKTRKVIAYSENAPEMLTMVSHAVPNVGDHPALGIGTDIRSIFTSQSASAFQKALGCGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIVDFEPVKPHEHGAPTTAAGALQSYKLATKSINRLQSLPSGSMETLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVKKPGLEPYLGLHYPATDVPQATRFLFMKNKVRIIVDCSAKHVKVIQDKNIPFDLTLCGSTLRAPHSCHLQYMENMKASASLVMAVVVNDSNEDGDSSDAVQPQKRKRLWGLVVCHHITPKFVPFPLRYACEFLAQVFAIHVNKEIELEYQVIERNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNNVWRLGVAPSESQIREIALWLSECHKDSTGLSTDSLSDAGFPGAAALGDIICGMASVRISSNDIVFWFRSHTAAEIRWSGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTEIMDISTNAINTRLSDLKIEGMQELEAVTNEMVRLIETATVPIFAVDVDGMVNGWNAKCSELTGLPVEEAVGKHLLMLVDDFSTDRVKKMLDMALQGEEEKNVQFEMKTHDLKIDSGPICLVVNACVSRDLQHNVVGVCFVAQDITIQKTFMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREKVMNKMLLGEVFGTQMACCRLKNQEAVVNFSIVLNKAMTGLETEKVSFGFFTRNGKYVECLLSMSTKVDIEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLCGIVFSWKLLEGTELGTDQKQLLHTGTQCQRQLSKILDDSDLDSIIDGYLDLEMVEFTLQEVLVASLSQVMTKSSAKGIQVVSDVAEEITTETLYGDSLRLQQVLSDFLLISINSTPTGGQVVVSASLTKDRLGKLVQLAYLELSITHDGFGVPEALLNQMFGRDGHESEEGISLLISRKLLKHMSGDVRYIRESGKSSFILSVELAMSHKLGA. 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05203 1139 FunFam Phytochrome 421 552 - -
Seca2g05203 1139 FunFam Phytochrome 628 759 - -
Seca2g05203 1139 SUPERFAMILY GAF domain-like 213 413 - -
Seca2g05203 1139 Gene3D - 972 1137 IPR036890 -
Seca2g05203 1139 MobiDBLite consensus disorder prediction 1 29 - -
Seca2g05203 1139 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Seca2g05203 1139 Gene3D PAS domain 778 890 - -
Seca2g05203 1139 SMART gaf_1 233 426 IPR003018 GO:0005515
Seca2g05203 1139 CDD PAS 776 887 IPR000014 -
Seca2g05203 1139 CDD PAS 643 749 IPR000014 -
Seca2g05203 1139 Gene3D PAS domain 86 336 - -
Seca2g05203 1139 SUPERFAMILY GAF domain-like 424 602 - -
Seca2g05203 1139 ProSiteProfiles PAS repeat profile. 632 702 IPR000014 -
Seca2g05203 1139 SMART HKATPase_4 1021 1133 IPR003594 -
Seca2g05203 1139 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 654 669 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 727 744 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 747 767 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 PRINTS Phytochrome signature 635 651 IPR001294 GO:0006355|GO:0009584
Seca2g05203 1139 Pfam PAS fold 635 749 IPR013767 GO:0006355
Seca2g05203 1139 Pfam PAS fold 765 887 IPR013767 GO:0006355
Seca2g05203 1139 Pfam GAF domain 233 416 IPR003018 GO:0005515
Seca2g05203 1139 Pfam PAS fold 82 198 IPR013654 GO:0006355
Seca2g05203 1139 PANTHER TWO-COMPONENT HISTIDINE KINASE 862 1122 - -
Seca2g05203 1139 SMART pas_2 764 833 IPR000014 -
Seca2g05203 1139 SMART pas_2 634 700 IPR000014 -
Seca2g05203 1139 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 406 IPR016132 -
Seca2g05203 1139 Gene3D - 214 577 IPR029016 -
Seca2g05203 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 971 1125 IPR036890 -
Seca2g05203 1139 PIRSF Phytochrome_conventional 9 1139 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Seca2g05203 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1021 1129 IPR003594 -
Seca2g05203 1139 ProSiteProfiles PAS repeat profile. 765 817 IPR000014 -
Seca2g05203 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 779 885 IPR035965 -
Seca2g05203 1139 Gene3D PAS domain 625 761 - -
Seca2g05203 1139 SMART HisKA_10 909 974 IPR003661 GO:0000155|GO:0007165
Seca2g05203 1139 NCBIfam PAS domain S-box protein 639 754 IPR000014 -
Seca2g05203 1139 Pfam Phytochrome region 429 603 IPR013515 GO:0006355|GO:0009584
Seca2g05203 1139 ProSiteProfiles Histidine kinase domain profile. 916 1135 IPR005467 -
Seca2g05203 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 200 IPR035965 -
Seca2g05203 1139 Gene3D - 421 594 IPR043150 -
Seca2g05203 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 745 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05203 Seca-Chr2 138512097 138518419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05203 10 1136 Histidine Kinase Gene Family AT1G09570 74.379 0.0 1758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05203 K12120 - gmx:100791098 1857.42