Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05198 ATGGCTTCTTCTATCACAGTAATAGGTGCTTCTTCCGCATATCAAGCTCCCTCTCTCGAACTATATAAGAAGCCAACCACCACTTCTACTTCCTCCGTTAGGCTCCAATGTCTAGACACCAAATCCCGCTCTAACTACCTCCTCAGAGCTCACCGTCACCCTAACTTCGATAGGTTTGTTCCTTCCGCCATTGCTACCCCCAATTCTTCTTCTTCTTCCCTCCTAAGTGAAGAAGCTTTCAAAGGGATAGGTCGTGACTTCACTCAAAACGACGACTCTGAAACGGAGGAGCCATCTCCTGCTAACGTGGACGAACTCGACGTTTCCAAGCTCGGCTTGCCCTCCCGCCTCGTCGACTCACTCCAGAACCGTGGGATTACCCATCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACAGGGAAGACATTAGCATTTGGGATTCCAATTATTAAAGGTCTCACTGAAGATGAGCATGCAGGTTCACACAGGAGGTCTGGTCGTCTTCCTAGAGTTTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAGGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTAAACACAGTCTGTGTTTATGGGGGTGTTTCTTATGTTACCCAGCAAAGTGCACTTACACGTGGCGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGATCTAATAAATGGAAACAGCCTTAAGCTGAGCGAAGTTCAGTATTTGGTCCTAGATGAAGCTGATCAGATGCTTGCAGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAAAAACTCCCAGCTGAGAGACAGAGCATGCTTTTCTCTGCCACCATGCCTGGCTGGGTGAAGAAATTGGCTAGAAAATATTTGGACAATCCATTAACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGAATAAAACTTTATGCTCTATCAGCCACTGCCACTTCAAAACGGACAATTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACTCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAACTTCTGAAGCACTGCACGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGGCGTGCAGGAAAACAAGGTACTGCTATTTTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTGGGCTGCAAATTTGAATTTGTTAACGCACCAGCTATGGAAGATGTTTTGGAGTCATCCGCTGAGCAAGTTGTTGCTACACTTAATGGAGTTCATCCTGAGTCTGTTGCATTTTTTACCCCAACTGCTCAAAAACTGATTGATGAACAAGGAACAAGTGCCCTCGCAGCTGCACTAGCACAACTGAGTGGATTCTCCCGACCTCCATCATCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTGACTCGAGATTCAGAAAATTCTAGAAGATATTTTTCAGCAAGATCGGTCACTGGGTTTCTTTCTGATGTTCATTCTGCAGCTGCGGATGAAGTGGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGGTACTTGATAAGGACATACCACCTGGAAACACTATTTCCAAGATCACTAAGTTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATAGAAGTAGCCGAAAAGGTTCCACTTCTAGGGATCGAAGAGGTTTTAAAACCTCACGGGGATGGGATGGGGGCCGAGACTCTGATGATGAGTTTGGTGATTCATTTAGGAGAGGTGGTAGAAGTTATAAAACTGGCAACAGCTGGTCTCGAGGAGCAAAAAGGAGTGAGGGTGATTGGCTGATTGGAGGCAGACGATCAAGCAGGTCTTCTTCATCAGACAGAGGAGGTTTTGGAGGGGCCTGTTTTAATTGTGGGGAATCTGGGCACCGAGCATCTGATTGTCCAAACAAGCGAGGCTTCTTCTAG 2259 0.4511 MASSITVIGASSAYQAPSLELYKKPTTTSTSSVRLQCLDTKSRSNYLLRAHRHPNFDRFVPSAIATPNSSSSSLLSEEAFKGIGRDFTQNDDSETEEPSPANVDELDVSKLGLPSRLVDSLQNRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAGSHRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPAERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYALSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFVNAPAMEDVLESSAEQVVATLNGVHPESVAFFTPTAQKLIDEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWVTLQLTRDSENSRRYFSARSVTGFLSDVHSAAADEVGKIHLIADERVQGAVFDLPEDIAKEVLDKDIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRSSRKGSTSRDRRGFKTSRGWDGGRDSDDEFGDSFRRGGRSYKTGNSWSRGAKRSEGDWLIGGRRSSRSSSSDRGGFGGACFNCGESGHRASDCPNKRGFF. 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05198 752 MobiDBLite consensus disorder prediction 85 106 - -
Seca2g05198 752 MobiDBLite consensus disorder prediction 643 688 - -
Seca2g05198 752 Gene3D - 332 521 IPR027417 -
Seca2g05198 752 Pfam Zinc knuckle 731 747 IPR001878 GO:0003676|GO:0008270
Seca2g05198 752 SUPERFAMILY Retrovirus zinc finger-like domains 712 750 IPR036875 GO:0003676|GO:0008270
Seca2g05198 752 ProSiteProfiles Zinc finger CCHC-type profile. 732 747 IPR001878 GO:0003676|GO:0008270
Seca2g05198 752 CDD SF2_C_DEAD 340 457 - -
Seca2g05198 752 Gene3D - 107 318 IPR027417 -
Seca2g05198 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 314 IPR014001 -
Seca2g05198 752 SMART ultradead3 125 331 IPR014001 -
Seca2g05198 752 Pfam Helicase conserved C-terminal domain 340 448 IPR001650 -
Seca2g05198 752 CDD DEADc 117 315 - -
Seca2g05198 752 Pfam DEAD/DEAH box helicase 130 303 IPR011545 GO:0003676|GO:0005524
Seca2g05198 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 496 IPR001650 -
Seca2g05198 752 SMART c2hcfinal6 731 747 IPR001878 GO:0003676|GO:0008270
Seca2g05198 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 469 IPR027417 -
Seca2g05198 752 FunFam ATP-dependent RNA helicase RhlE 97 317 - -
Seca2g05198 752 MobiDBLite consensus disorder prediction 615 728 - -
Seca2g05198 752 Pfam GUCT (NUC152) domain 535 635 IPR012562 GO:0003723|GO:0004386|GO:0005524
Seca2g05198 752 Gene3D - 717 750 - -
Seca2g05198 752 SMART helicmild6 368 448 IPR001650 -
Seca2g05198 752 CDD GUCT_Hera 542 622 - -
Seca2g05198 752 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 104 676 - -
Seca2g05198 752 FunFam Nucleolar RNA helicase II 336 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05198 Seca-Chr2 138470508 138475445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05198 94 470 Eukaryotic Initiation Factors Gene Family AT1G72730 36.458 1.99e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05198 - - gmx:100789516 1198.34