Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05191 ATGGAAAAATTCATTCTCAGTGGTCTTATATTGTTAGTGAGGTTACTCACTTCAGAACTCAGAGTAGCATCCGCTGCAGGTTGGCTGCAAGCACATGCAACTTTCTATGGTGGAAGTGATGCCTCAGCAGGGGGTGCATGTGGCTATGGAAATCTCTACACAGATGGTTATGGCATAAAAACTGCAGCTTTGAGTACAGCTTTGTTTAATGATGGCAAGTCATGCGGTGGTTGCTATGAAATAACTTGTGACGCAAAACAAGTGCCCCAATGGTGCCTTAAGGGCACTTCCATCACTATTACTGCCACAAATTTCTGTCCCCCAAACTTTGCTCTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCTTTTGAGACAATAGCCAAATACAGAGCTGGAATTGTGCCAGTTTTATACAGAAAGTATGTTATTATTAATTATTGTTTTGTAATAGTTGAGTGCAAAAGAAGTGGGAACATCAGATTTACCATCAATGGGAGAGACTTTTTTGAACTAGTGCTGATAAGCAATGTAGGTGGTGCTGGAGAGATTTCACGTGTTTGGATCAAAGGGTCCAAAATGAAAAACTGGGAAACCATGTCAAGGAATTGGGGTGCTAACTGGCAGAGCTTAAGCTATCTCAATGGTCAGAGCTTATCTTTCAGAATTCAACTCAGCAATGGGAAGACTCTCACAGCTATTAACGTGGCACCATCCAATTGGAGATTTGGCCAGTCTTTCAAAAGTAATGTTCAATTCTGA 792 0.4179 MEKFILSGLILLVRLLTSELRVASAAGWLQAHATFYGGSDASAGGACGYGNLYTDGYGIKTAALSTALFNDGKSCGGCYEITCDAKQVPQWCLKGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPVLYRKYVIINYCFVIVECKRSGNIRFTINGRDFFELVLISNVGGAGEISRVWIKGSKMKNWETMSRNWGANWQSLSYLNGQSLSFRIQLSNGKTLTAINVAPSNWRFGQSFKSNVQF. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05191 263 Gene3D - 16 152 IPR036908 -
Seca2g05191 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Seca2g05191 263 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Seca2g05191 263 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Seca2g05191 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Seca2g05191 263 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Seca2g05191 263 Pfam Lytic transglycolase 61 149 IPR009009 -
Seca2g05191 263 FunFam Expansin 169 263 - -
Seca2g05191 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 151 IPR007112 -
Seca2g05191 263 PANTHER EXPANSIN-A15 12 260 IPR002963 GO:0009664
Seca2g05191 263 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Seca2g05191 263 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Seca2g05191 263 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Seca2g05191 263 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Seca2g05191 263 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Seca2g05191 263 SUPERFAMILY Barwin-like endoglucanases 20 187 IPR036908 -
Seca2g05191 263 Gene3D - 166 263 IPR036749 -
Seca2g05191 263 Pfam Expansin C-terminal domain 170 248 IPR007117 -
Seca2g05191 263 CDD DPBB_EXPA_N 27 151 - -
Seca2g05191 263 SUPERFAMILY PHL pollen allergen 166 259 IPR036749 -
Seca2g05191 263 SMART dpbb_1 61 149 IPR007112 -
Seca2g05191 263 FunFam Expansin 18 155 - -
Seca2g05191 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05191 Seca-Chr2 138383713 138384934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05191 5 263 Expansin Gene Family AT4G01630 72.519 4.85e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05191 - - gmx:100813434 443.736