Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05190 ATGGCTTCTTTGTTCTCAACTCATTTCGTTCAATGTCAGAACCCACTTCCGCGCCTTTGTCATCTCCAGGGCAATTTTAGCCAAGATGTGTCTAAGGTTCAAAGGCCACATATGATCTGTAGCGTTACTAGATACAGTAAAGCATTGGCATCAACATCACATTATGCCTTGAGGCTTTCTGCAACGCAACAATCTGAACCAAGATCAATTAGATATAGAAGAATGACATGCGTCAATGCTACAGACAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGATGTAGAAGTTGGGGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGTACCTAAAACAGTTGAAAATTTCCGGGCTTTGTGCACAGAGTTGAATAATCTTTGTGCAGGAGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGCATCATCAAAGAATTCATGATTCAAGGAGGGGACTTTACTGAGGGAGATGGAACTGGTGGAACTAGTATCTATGGTTCAAAATTTAAAGATGAGAGTTTTGCCTTGAAGCATATTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGTACTGTAAAGACTCCATGGCTAGACAATCGTCATGTTGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAGTCCCAGGAGACAAGCAGGCTAGACAACCCTCGGAAGCCTTGCAGAATTGTTGATTGCGGAGAATTGCCTGCAGATGGTTGA 798 0.4248 MASLFSTHFVQCQNPLPRLCHLQGNFSQDVSKVQRPHMICSVTRYSKALASTSHYALRLSATQQSEPRSIRYRRMTCVNATDNVQELQAKVTTKCFFDVEVGGEPVGRIVLGLFGEVVPKTVENFRALCTELNNLCAGEKGYGYKGSSFHRIIKEFMIQGGDFTEGDGTGGTSIYGSKFKDESFALKHIGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDNPRKPCRIVDCGELPADG. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05190 265 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 144 161 IPR020892 GO:0003755|GO:0006457
Seca2g05190 265 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 96 260 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 97 259 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 CDD cyclophilin_ABH_like 94 259 - -
Seca2g05190 265 Gene3D - 80 264 IPR029000 -
Seca2g05190 265 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 94 261 - -
Seca2g05190 265 FunFam Peptidyl-prolyl cis-trans isomerase 81 265 - -
Seca2g05190 265 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 207 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 219 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 220 235 IPR002130 GO:0000413|GO:0003755
Seca2g05190 265 SUPERFAMILY Cyclophilin-like 87 261 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05190 Seca-Chr2 138378658 138381587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05190 107 258 U-box Gene Family AT5G67530 42.484 3.96e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05190 K03768 - gmx:100785805 426.017