Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05186 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTCAGGAAAGGTCTCTGGTCACCTGAGGAAGATGAAAAACTTCTGAGGCATATTACTAAGTACGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGTAAAAGCTGCAGGCTTAGGTGGATCAACTATTTAAGGCCTGATTTAAAGAGAGGTACATTTTCAGAAGAAGAAGAAAATCTTATCATTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCAGCACAATTGCCTGGTAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTCAGGCAAAGAGGTATAGACCCTGTCACCCATAAACCACTTTCTGAGGTTGAAAATGGAGAGGAGGACAAAACCAGGAGCCAAGAGAAAGGACCAGAAATAACCAATGAATTGAACCTCCTGAAATCAGAGAGCTCCAAGTCAGATGCAGCTTCCTATGTGCATAGACCATCTTCAAATTCTCCAAAAGCCTATGCAACTGACATGGAAGGTTTTTCCAGCTCCAAGATTAACAGCAAAAATGACAGCACCTTGGTAACCAATTGTTTTAGTAAAGACTTGTTCCTTGATAGGTTTATGACATCCCACCAAGATAGCTACTCCACTAGTTGTCAGCCTCTAGATTTGATGGGAAATTACCCACTTCAGATGAGTTATGCATCCACTGACACTCTCCCAATCAATTCAAACTCTTGTCATTGGTTCACACAAATTGGAAAGCCATTTGATATGAACTCTGAATATACTTCTAACATTATGTCTATTCTTCCACCAACTAGCTCACTTCTCCCTAGTTCTTATTGCTACAAGCCAGCACTTGATGTCCCCTCAGAAGATATCTCTACAACCTCTTTTGCTGTGAATGGATCCAATTACTGGGAAGCCAGTGCTTCCAACAATAGTGATAACAGCAACACAAGTAATAGCAGTAGAGAGTTGTCAAGTAACAGCCCCTTAAACATAAAGAACAATATGCTTTCTTCTTGGGGATTGACAGATTGTGGAACCTCTACTAAAGAGGCTCAAATTCAAATTCATCTGACAGATAGCCGCACAGAAGAAGCTAAGTGGTCTGAGTACCTTCACAACCCAATGTTAATGCTGGCAGCTGTACAAAATCAAGCACATGAATCTTTATGTAACCAGATAAAGCCGGCCACTCATTTGGTACCAGATGCTTTAGGGGCTATATTGCCTCATTCCAAACAACAAGTACCTTCTCAAACTTCTAGTATCTTTTCCAAGGACATTCAGAAGCTAACAGCAGCATTTGAACACATATAG 1350 0.4104 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSEEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEDKTRSQEKGPEITNELNLLKSESSKSDAASYVHRPSSNSPKAYATDMEGFSSSKINSKNDSTLVTNCFSKDLFLDRFMTSHQDSYSTSCQPLDLMGNYPLQMSYASTDTLPINSNSCHWFTQIGKPFDMNSEYTSNIMSILPPTSSLLPSSYCYKPALDVPSEDISTTSFAVNGSNYWEASASNNSDNSNTSNSSRELSSNSPLNIKNNMLSSWGLTDCGTSTKEAQIQIHLTDSRTEEAKWSEYLHNPMLMLAAVQNQAHESLCNQIKPATHLVPDALGAILPHSKQQVPSQTSSIFSKDIQKLTAAFEHI. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05186 449 FunFam MYB transcription factor 68 140 - -
Seca2g05186 449 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g05186 449 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g05186 449 MobiDBLite consensus disorder prediction 122 180 - -
Seca2g05186 449 CDD SANT 17 61 IPR001005 -
Seca2g05186 449 FunFam Myb transcription factor 11 67 - -
Seca2g05186 449 MobiDBLite consensus disorder prediction 122 146 - -
Seca2g05186 449 Gene3D - 11 67 - -
Seca2g05186 449 Gene3D - 69 146 - -
Seca2g05186 449 MobiDBLite consensus disorder prediction 147 180 - -
Seca2g05186 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca2g05186 449 SMART sant 66 114 IPR001005 -
Seca2g05186 449 SMART sant 13 63 IPR001005 -
Seca2g05186 449 MobiDBLite consensus disorder prediction 319 341 - -
Seca2g05186 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca2g05186 449 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca2g05186 449 PANTHER MYB DOMAIN PROTEIN 55 1 346 - -
Seca2g05186 449 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g05186 449 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05186 Seca-Chr2 138315669 138318535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05186 1 145 MYB Transcription Factor Family AT4G01680 90.345 5.01e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g05186 Myb_DNA-binding 2.2e-14 CL0123