Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05183 ATGAGTGAGAAGATGCTTGACTCTAGCCACTCAGGGATGACAAGAAACTCCTCTCATCTAGCTTCCATTTATGGCAAGGATTTAGTTGAGCTGGTATGGGAAAATGGTCAGATTCTTGTACAAGGAGGTTCATCAAATGGAACAGGAAAGGCTCCTATGTGCATAGGGTATTCAATAAACCCTTCACATAACATGGAAGCAATAGATGAAGATGCCAGCATTACAAAAAAAACAAGCTTAAGTACATCATCATACTCACTTTTGAATCACTTCCCAGCTCAAAAAAACTCTGACTTTACCTCTTCTCATCAAAGCAATGGCCAAGCTTCCTGTCAGATTGATTTGCAATCTTCCCAAAGCAAGAATTCCTTCAAGTCTAATGATGAATTCACAAACTTGAGACCAATAAAAAACTCTAACCTCACTGAGGGACCTCATCATCAGCTCAATACTACAACAGCAAATAGTCATTTGTGCAAATATCCCTCACAACAGTCCTTACCAAGAATGGACTCAAACCAAACACCAACAACAAACTCAAAGAAACAGTACTTTGGATGTGATCAAAGATCAAGAAAGGTGAACTTCTCCAACTTTTTGATACCTACAATGCTTCTCAGATCAACATATCAGGGAAACAGTGCAACTAGGCCAATAAGAAATCCATCTTCAGCAAGAGTGGAGGAGATTGAACCAAAAGCAGCAAATATTGCTTCAACTAGTGGCAAAGCTCCTGATTCAGCTAAAGGATCAACTGGTCTCACCACAGGATCTCAAGAAAGAACATCATTAATAACTGCTAATAAATCCAACCTGGCATCCCTTGCTGAAAGAAGTGCTGAACCACCCCTTGACCAACACTCTGAAGCTATTGGCCATAGCATTAATGCCCTTGGAACTCAAGGATCACATGGTCAATATTATAACCAAACCTCAAACTCAGCTGCAGTTAGAGCAAAAGGAAAAGCTAATGCTAACTTGTGTAATGAAAGAGTATCTTCTTCTGTATGCTCACTTGGAGCCTCAAATGACCCAAACTTGGGTATCAGGAAACATGAGGACACTGATGACTCAACATATTTTAGTGATAATGATGAAGAAGCAGAAGATATAGTAAAGGAAATGACAGCTACGGAGGGTAACAGAGTCAAGAGAAGCAGGAATGCAGAGATTCATAACTTATCTGAAAGGAAACGAAGAGATAAAATCAACAAGAAGATGCGCACATTAAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGATGATGCCATCGACTATCTAAAGACCCTCAAGCTTCAGTTACAGGTAAAGTTTGTTAATAACATATCTGGTTTAAAAACGTGA 1362 0.3935 MSEKMLDSSHSGMTRNSSHLASIYGKDLVELVWENGQILVQGGSSNGTGKAPMCIGYSINPSHNMEAIDEDASITKKTSLSTSSYSLLNHFPAQKNSDFTSSHQSNGQASCQIDLQSSQSKNSFKSNDEFTNLRPIKNSNLTEGPHHQLNTTTANSHLCKYPSQQSLPRMDSNQTPTTNSKKQYFGCDQRSRKVNFSNFLIPTMLLRSTYQGNSATRPIRNPSSARVEEIEPKAANIASTSGKAPDSAKGSTGLTTGSQERTSLITANKSNLASLAERSAEPPLDQHSEAIGHSINALGTQGSHGQYYNQTSNSAAVRAKGKANANLCNERVSSSVCSLGASNDPNLGIRKHEDTDDSTYFSDNDEEAEDIVKEMTATEGNRVKRSRNAEIHNLSERKRRDKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQVKFVNNISGLKT. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05183 453 MobiDBLite consensus disorder prediction 116 183 - -
Seca2g05183 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 387 436 IPR011598 GO:0046983
Seca2g05183 453 SMART finulus 393 442 IPR011598 GO:0046983
Seca2g05183 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 386 442 IPR036638 GO:0046983
Seca2g05183 453 PANTHER TRANSCRIPTION FACTOR PIF3 2 442 IPR044273 GO:0003700|GO:0006355
Seca2g05183 453 MobiDBLite consensus disorder prediction 240 263 - -
Seca2g05183 453 Gene3D - 383 444 IPR036638 GO:0046983
Seca2g05183 453 FunFam Basic helix-loop-helix transcription factor 382 445 - -
Seca2g05183 453 Pfam Helix-loop-helix DNA-binding domain 392 436 IPR011598 GO:0046983
Seca2g05183 453 CDD bHLH_AtPIF_like 387 442 IPR047265 -
Seca2g05183 453 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05183 Seca-Chr2 138278639 138281842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05183 297 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 45.399 5.08e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g05183 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05183 K12126 - gmx:100784724 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05183 2 138278639 138281842 Seca2g05183 2 138278639 138281842 ECH
Seca8g06581 8 160306248 160308882 Seca2g05183 2 138278639 138281842 PCT