Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05182 ATGGGAAAAGCTCCTAGTTCTTCCTCTTCTTCTATTAGCAGTAGTAGCAACCACCAACTTGTTCTTTCAACTGCTTCCTCTCTCACACAGTTTAACACACAAGAACTTCCTACAGATCTTAGCCTTGGATTGAGCCTTTCAGCTACTCAACATGTTGGCTCTTCTATTTCAAGGGGACAATGGCAACCAAACCACCCAATTTTAAGTGGTTCACAAGCTATTGAAGTAAATGATTGCAATGATCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGAATTCCAATTGGGAGAAAACTCAATATACTTGCTCATGATAGTTACCATGAGTTAGTAAAGACTCTTGAACACATGTTTGACACTACCATTCTATGTAAAGTCTATTGCTATATATACTCTCACTGTGTATGGTTTGGATATTGGTGA 426 0.3873 MGKAPSSSSSSISSSSNHQLVLSTASSLTQFNTQELPTDLSLGLSLSATQHVGSSISRGQWQPNHPILSGSQAIEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHDSYHELVKTLEHMFDTTILCKVYCYIYSHCVWFGYW. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05182 141 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 121 IPR003311 GO:0005634|GO:0006355
Seca2g05182 141 Pfam AUX/IAA family 78 125 IPR033389 -
Seca2g05182 141 ProSiteProfiles PB1 domain profile. 84 141 IPR000270 GO:0005515
Seca2g05182 141 Gene3D - 78 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05182 Seca-Chr2 138264464 138265133 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca2g05182 AUX_IAA 7.5e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05182 K14484 - gmx:100818376 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05182 2 138264464 138265133 Seca2g05182 2 138264464 138265133 ECH
Seca8g06584 8 160335259 160337105 Seca2g05182 2 138264464 138265133 PCT