LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05179	ATGGAGAACCGACACCACCGTGAATTGACTTTCTTAAGCTCCGGCGACTTCCTCCGCCACAATCTAGATCCTCCAACCGGTCACAACACAGATCCTCCTCCCATCAAAGAAATGGATTTCTTCTCATCAGCTAAAAACAACAACAACAAAGATACTAATGATGATAATCTTCATCACCAGCAGCGTGATCGAGATCAACATGACAACAACACCAAAGAAGGATCACCAACACTCCACACCGATCAGCCTGTAAACATTGGGCTGAATTTAACGTGTGCAAGTGCTGGAGTGTCAAGAGGAGCGAATGGTGAAAATTCTGAAACTGAGATGAGTAGACTTGAGAGTGAATTGCGGAGACTACAAGAAGAGAATCGCAGGTTGAAAATTGTTCTGGATCAGATCACCAAAAGCTATAGCCAATTACAAGCTCAGCTGATCATTGCTTTGCAGAAACAAAAGCCTCATCATCAGGTTCAGGTTCAGAATATGGAAGCGAATGGGGGGATCTTGATGCCGGGACAAAAATTTGTGGACCCTGGTGCAGCAGGACCATGCAACAAACTAGACGTCGTCAATGATGCATCGGTTTCTAATGATAAGACAGAACGAGAGGCATCGGTTTCTCCCTCAAACAATGGGGAGGTAATGTCAAAGAAACGCGACCATCCTTTGACTAAAGGAAAACAAGCTGCTACACCAGAAGATGTGTCCTCACACTCACAGAGTCAGGGCTCATCCAAGACCCCTAAGCTAGAACAAGAATCCAAAACTGCTGAACAAGTTAGCGGCGGTGGTGACGGTGAGCTTCCTTTCAGAAAAGCCAGGGTTTCCGTACGTGCAAGATCAGAAGCTCCCATGATTAGCGATGGATGTCAGTGGAGGAAATATGGGCAAAAAATGGCCAAGGGAAATCCTTGTCCTCGTGCTTACTATCGTTGCACTATGGCTGTAGGATGCCCAGTTCGCAAACAGGTGCAAAGATGTGCAGAGGACAGGACGGTTTTAATAACAACTTATGAAGGGAATCATAACCACCCTCTTCCACCAGCTGCAACTGCCATGGCAAATACCACATCAGCAGCAGCGGCAATGCTCCTATCAGGTTCCGCCACGTCAAAGGAAGGGCTAACAACCTCTGCAGGATCGTATCTCTCTTCAATTCCCTATGCTTCAATGGCAACCCTTTCAGCTTCTGCACCATTCCCAACTATTACCCTCGATTTGACACAGACTGGGCCCAATGCCATGATGAATCTTCACCGAGGACCTTTCCCTCTCCCTCTACCTCTCCCATTAGCTGATCAGGGGCCTCAATTGTTAGGGCACCCGTTGTTCTTCCCCCAGCAGAGGGTAGCACCTGCTGCGGCTTTGCCCTTACTTCAACGACCACATTCGGCTATGGTGGAGACGGTGAGTGCAGCTATTGCTACCGATCCAAACTTTACAGCAGCGTTGGCGGCGGCTATCTCGTCAATAATTGGGGCACCCAGAGGAAGCAATGATGGAAGTGCTATTCCTGGTTCACCACAGCTTCCTCAGTCATGCACTACATTCTCTACCAACTAG	1566	0.4802	MENRHHRELTFLSSGDFLRHNLDPPTGHNTDPPPIKEMDFFSSAKNNNNKDTNDDNLHHQQRDRDQHDNNTKEGSPTLHTDQPVNIGLNLTCASAGVSRGANGENSETEMSRLESELRRLQEENRRLKIVLDQITKSYSQLQAQLIIALQKQKPHHQVQVQNMEANGGILMPGQKFVDPGAAGPCNKLDVVNDASVSNDKTEREASVSPSNNGEVMSKKRDHPLTKGKQAATPEDVSSHSQSQGSSKTPKLEQESKTAEQVSGGGDGELPFRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSATSKEGLTTSAGSYLSSIPYASMATLSASAPFPTITLDLTQTGPNAMMNLHRGPFPLPLPLPLADQGPQLLGHPLFFPQQRVAPAAALPLLQRPHSAMVETVSAAIATDPNFTAALAAAISSIIGAPRGSNDGSAIPGSPQLPQSCTTFSTN.	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	195	271	-	-
	Seca2g05179	521	SUPERFAMILY	WRKY DNA-binding domain	280	348	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	231	260	-	-
	Seca2g05179	521	FunFam	probable WRKY transcription factor 31	272	349	-	-
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	503	521	-	-
	Seca2g05179	521	Coils	Coil	103	144	-	-
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	500	521	-	-
	Seca2g05179	521	Pfam	WRKY DNA -binding domain	289	346	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	16	85	-	-
	Seca2g05179	521	ProSiteProfiles	WRKY domain profile.	282	348	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca2g05179	521	Gene3D	WRKY domain	272	349	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	51	74	-	-
	Seca2g05179	521	MobiDBLite	consensus disorder prediction	195	214	-	-
	Seca2g05179	521	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	97	498	IPR044810	GO:0003700
	Seca2g05179	521	SMART	WRKY_cls	287	347	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05179	Seca-Chr2	138225097	138228152	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05179	7	521	WRKY Transcription Factor Family	AT4G01720	41.579	1.25e-95	297

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Seca2g05179		WRKY	6.1e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca2g05179	2	138225097	138228152	Seca2g05179	2	138225097	138228152	ECH
	Seca8g06586	8	160416198	160418882	Seca2g05179	2	138225097	138228152	PCT