Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05173 ATGAGGCCTGAGAATGGCGAAGCGCATAAACATGATGAAACAACTACCAACACAGAGGGGGAAAAGAGCAAACAAAAAGAGAAAGTTGAAACGGTTCCATATTACAGGCTGTTCTCATTTGCAGATTCTGCTGACATCATGTTGATGATTTTAGGCACCATTGGTGCCATTGGAAATGGTTTGGGTATGCCTATCATGACGTTGCTGTTTGGACAAATGATTGATAGCTTTGGAAATAACCAGTTTGGCCCAGACGTTGTCAACCAAGTTTCCAAGGTCTCTCTGAAATTTGTATACCTGGGAATAGGCACTGGTGTGGCTTCATTCCTCCAGGTGGCTTGCTGGATGGTCACAGGGGAGAGACAAGCTGCAAGAATTAGGGGCATGTATTTGAAAACTATACTGAGACAAGAGATTGCTTTCTTTGATAAGGAAACTAACACTGGAGAGGTGATAGGGCGAATGTCAGGTGACACTGTGCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTTTTGCAGCTAGTAGCTACATTCGTTGGGGGCTATGTGATAGCATTTATCAAAGGGTGGCTTCTTACTGTTGTCTTGTTGTCCAGTCTTCCACTTCTTGTTGCTGCTGGTGCTGCTATGGCTCTTATCATAGGAAAGATGGCATCCCGAGGGCAAAGCGCATATGCAAAAGCTTCACATGTAGTAGAACAGACAATTGGCTCAATAAGAACTGTTCAGTCCTTTACTGGGGAAAAGCAAGCAGTATCTAGTTACAGAAAATTTCTTGCAGATGCTTACAAATCAGGAGTTCATGAAGGTTTGGTATCCGGAATGGGTTTTGGCATGGTTATGTTAGTTATTTTCTGTGGTTATGCCTTGGCTGTATGGTTTGGCGCAAAGATGATAATAGAAAAAGGATATGATGGGGGTCAAGTGATCAATGTCATTGTTGCTGTGTTGAATGCTTCAATGTCTCTTGGCCAGACATCTCCTTCCATGAGTGCTTTTGCTGCGGGTCAAGCAGCAGCTTATAAAATGTTTCAGACAATTGAGAGAAAGCCAGAGATAGATGCTTATGACCCAAATGGAAAAGTACTAGAGGATATTCATGGTGAAATAGAATTAAGGGATGTTCATTTCAGTTATCCAGCCAGGCCTGAGGAGTTGATATTCAATGGATTCTCTCTTCACATACCAAGTGGCACCACTGCTGCTTTGGTAGGAGAAAGTGGAAGTGGCAAGTCTACAGTTATCAGTTTGATAGAAAGATTCTATGATCCACAAGCAGGTGAAGTTCTTATTGATAGCATTAATGTGAAAGAGTTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTAAGCCAGGAGCCAGCATTGTTTGCATCTAGCATTAAGGATAATATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGAACTGCCGCTGAACTTGCAAATGCTGCTAAATTTATTGATAAACTGCCACAGGGATTTGACACAATGGTTGGTGAGCACGGAACTCAACTATCTGGTGGACAGAAGCAACGTATTGCCATTGCAAGAGCAATCCTAAAAGATCCAAGAATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGTATAGTGCAAGAAGCTCTAGACAGGGTCATGGTCAACAGAACTACTATTGTTGTTGCACATCGCCTAAGCACAGTGAGGAATGCTGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGGACACATGTAGAATTACTCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGTTTACAAGAAGTAAACAAGGAATCAGAAGAAAGTGCAGACAAACAAAACAAGAGTGAACTTTCCTCAGAATCATTTAGACGATTGAGTCAAAGAGGCTCACTCTCACTTAGAAGATCAGGATCATCTGTGGGGAATAGTAGCCGCCACTCATTTTCAATTTCATTTGGTTTACCCACAGGAGTTAACATCCCTGATACTGAACATGAAAATTCACAACCTGAAGAAAAATCACCAGAGGTTCCACTCCGACGCCTTGCTTCCCTTAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTATAGCCGCCATAGCAAATGGTACTATATTTCCAATATTTGGCGTTTTGCTTTCCAGTGTTATCAAAACATTTTATGAACCATTCCATGAGATGAGCAAGGATTCCAAGTTTTGGTCACTAATGTTTGTGACCCTTGGAATTGCATCTTTAGTGGCAATTCCAGCCCGAGGATACTTTTTCTCTGTGGCTGGCAGTAAGTTAATACAACGTATTAGGTTGATTTGTTTTGAGAAGGTGGTCAACATGGAAGTTGGTTGGTTTGATGAGCCTCAGCACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCGCTGGGACTTTTGATTCAAAACATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCATTGCAAGCTGGCAGTTGGCGTTTATTCTTCTTGTCTTGGTTCCTCTCATTGGAATGAATGCATATATTCAAATGAAATTCATGAAGGGATTCAGTGAAGATGCAAAGAAGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTGGGAAGCATAAGAACAGTGGCTTCTTTCTGTGCTGAAGAGAAAGTTATGGACTTGTACAGGAAGAAATGTGAAGGTCCTGTGAAAACAGGGATACGGCAAGGCTTGATCAGTGGAACAGGATATGGGATTTCATTTTTCTTGCTCTATAGTGTGTATGCAACCAATTTCTATGCTGGAGCAAGATTTGTGGACGCTCACAAGGCAACATTCTCAGATGTTTTCCGGGTTTTCTTTGCTTTAACAATGGCAGCTATTGGAATTTCCAACTCAAGCTCTCTAGCTCCTGATTCTAGCAAAGCCAAGACTGCCACTGCTTCCATATTTGAAATAATTGATAGGAAGTCAAAGATAGATCCTAGTGATGAATCTGGCAGCACACTGGATAGCACAAAGGGTGAAATAGAGCTTCATCATGTGAGCTTTAAGTATCCATCTAGGCCACATATACAAATTTTTCGAGACCTTAGCTTGACTATCCATTCTGGCAAGGTAAAATTTAAGGGTTTTATTTATTTATTTATTTATTTAACTGTGGCTCTAGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTAATTGCTTTGTTACAAAGATTTTATGACCCTGATTCTGGACAAATTACACTTGATGGCATAGAAATTCAGAGTTTACAGCTTAAGTGGTTAAGGCAACAGACAGGCCTTGTAAGCCAAGAGCCAGTTTTGTTCAATGACACTATCCGTGCCAATATTGCCTATGGAAAGGATGGCAAAGCAACTGAAGCAGAAATCATAAATGCAGCAGAACTGGCCAATGCACATAGGTTTATTAGTGGCTTACAACAGGGTTATGATACAGTAGTGGGAGAAAGGGGGATCCAACTATCTGGTGGGCAGAAACAACGGGTAGCCATTGCACGTGCTATAATTAAAAGCCCAAAGATATTGCTACTAGATGAGGCCACAAGTGCATTAGACGCAGAGTCAGAGAGAGTTGTTCAAGATGCATTAGACAAAGTGATGGTGAACCGGACCACTGTGGTTGTGGCACATCGTCTATCTACAATTAAAAATGCAGATGTGATTGCAGTGCTTAAAAATGGAGTTATAGTGGAGAAAGGAAGGCACGAGACACTAATTAACATTAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCATGCAAGTGCTACGACTGTGTGA 3855 0.4166 MRPENGEAHKHDETTTNTEGEKSKQKEKVETVPYYRLFSFADSADIMLMILGTIGAIGNGLGMPIMTLLFGQMIDSFGNNQFGPDVVNQVSKVSLKFVYLGIGTGVASFLQVACWMVTGERQAARIRGMYLKTILRQEIAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLVATFVGGYVIAFIKGWLLTVVLLSSLPLLVAAGAAMALIIGKMASRGQSAYAKASHVVEQTIGSIRTVQSFTGEKQAVSSYRKFLADAYKSGVHEGLVSGMGFGMVMLVIFCGYALAVWFGAKMIIEKGYDGGQVINVIVAVLNASMSLGQTSPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKVLEDIHGEIELRDVHFSYPARPEELIFNGFSLHIPSGTTAALVGESGSGKSTVISLIERFYDPQAGEVLIDSINVKEFQLRWIRGKIGLVSQEPALFASSIKDNIAYGKEGATIEEIRTAAELANAAKFIDKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESESIVQEALDRVMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVEKGTHVELLKDPEGAYSQLIRLQEVNKESEESADKQNKSELSSESFRRLSQRGSLSLRRSGSSVGNSSRHSFSISFGLPTGVNIPDTEHENSQPEEKSPEVPLRRLASLNKPEIPVLLIGCIAAIANGTIFPIFGVLLSSVIKTFYEPFHEMSKDSKFWSLMFVTLGIASLVAIPARGYFFSVAGSKLIQRIRLICFEKVVNMEVGWFDEPQHSSGAIGARLSADAASVRALVGDALGLLIQNIATALTGLIIAFIASWQLAFILLVLVPLIGMNAYIQMKFMKGFSEDAKKMYEEASQVANDAVGSIRTVASFCAEEKVMDLYRKKCEGPVKTGIRQGLISGTGYGISFFLLYSVYATNFYAGARFVDAHKATFSDVFRVFFALTMAAIGISNSSSLAPDSSKAKTATASIFEIIDRKSKIDPSDESGSTLDSTKGEIELHHVSFKYPSRPHIQIFRDLSLTIHSGKVKFKGFIYLFIYLTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQSLQLKWLRQQTGLVSQEPVLFNDTIRANIAYGKDGKATEAEIINAAELANAHRFISGLQQGYDTVVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVLKNGVIVEKGRHETLINIKDGFYASLVQLHASATTV. 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05173 1284 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Seca2g05173 1284 Gene3D ABC transporter type 1, transmembrane domain 993 1015 IPR036640 GO:0005524|GO:0016020
Seca2g05173 1284 Gene3D ABC transporter type 1, transmembrane domain 684 992 IPR036640 GO:0005524|GO:0016020
Seca2g05173 1284 Gene3D ABC transporter type 1, transmembrane domain 36 630 IPR036640 GO:0005524|GO:0016020
Seca2g05173 1284 SMART AAA_5 1066 1259 IPR003593 GO:0016887
Seca2g05173 1284 SMART AAA_5 399 585 IPR003593 GO:0016887
Seca2g05173 1284 SUPERFAMILY ABC transporter transmembrane region 36 356 IPR036640 GO:0005524|GO:0016020
Seca2g05173 1284 ProSitePatterns ABC transporters family signature. 1179 1193 IPR017871 GO:0005524|GO:0016887
Seca2g05173 1284 FunFam ABC transporter B family member 1 362 611 - -
Seca2g05173 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 610 IPR027417 -
Seca2g05173 1284 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05173 1284 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05173 1284 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
Seca2g05173 1284 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524|GO:0016887
Seca2g05173 1284 Gene3D - 362 611 IPR027417 -
Seca2g05173 1284 Gene3D - 1016 1279 IPR027417 -
Seca2g05173 1284 MobiDBLite consensus disorder prediction 614 688 - -
Seca2g05173 1284 Pfam ABC transporter transmembrane region 704 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05173 1284 Pfam ABC transporter transmembrane region 49 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g05173 1284 CDD ABC_MTABC3_MDL1_MDL2 1026 1277 - -
Seca2g05173 1284 MobiDBLite consensus disorder prediction 614 629 - -
Seca2g05173 1284 FunFam ABC transporter B family member 9 993 1015 - -
Seca2g05173 1284 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Seca2g05173 1284 PANTHER ABC TRANSPORTER B FAMILY 11 613 IPR039421 -
Seca2g05173 1284 MobiDBLite consensus disorder prediction 1 27 - -
Seca2g05173 1284 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Seca2g05173 1284 MobiDBLite consensus disorder prediction 630 675 - -
Seca2g05173 1284 FunFam ABC transporter B family member 1 1016 1279 - -
Seca2g05173 1284 FunFam ABC transporter B family member 9 36 368 - -
Seca2g05173 1284 Pfam ABC transporter 1069 1207 IPR003439 GO:0005524
Seca2g05173 1284 SUPERFAMILY ABC transporter transmembrane region 686 1010 IPR036640 GO:0005524|GO:0016020
Seca2g05173 1284 FunFam ABC transporter B family member 1 684 992 - -
Seca2g05173 1284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Seca2g05173 1284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1277 IPR027417 -
Seca2g05173 1284 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1276 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05173 Seca-Chr2 138177141 138182487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05173 25 1278 Calmodulin-binding Proteins AT2G36910 43.997 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05173 K05658 - gmx:100802547 2088.92