Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05172 ATGGCAATGTCTGTGATGAGAACAAAACAAAGCCTGGTTAAACCAGCCAAGGAGACTCCATCCACCACACTAGACCTATCAGTCATTGATAGATTACCTGTTCTAAGATGCAATGCTAGAACCTTACACGTATTCAAACATGGCCCTGAAGCTACAAGTGTCATAAAAGAAGCCTTGTCTCAAGCACTGGTTCCCTATTACCCTCTTGCAGGACGCCTCAAAGAATCCAAACCAGGGTGTCTCCAAATTGAATGCTCAGGTGATGGCGTGTGGTATGTTGAGGCATCATCTGATTGCACCCTTGACTCTGTCAATTTCTTTGATGATGTTGAGTCTATTCCATATGATCATCTTCTTCCTGATAATATTCCTGACACAGAACACATAGACCCCCTTGTGCAAATGCAGGTAACACAATTTGGTTGTGGGGGTTTTGTGACAGGCCTCATATTCTGTCATAGCATATGTGATGGTCTTGGAGCTGCACAATTTCTAAATGCTATTGGGGAGGTAGCTAGAGGTATTGAGAAACCCAGCACTGAACCAGTGTGGAACAGAGACTTCTTTCCATCTCCTCAAACACCACAAGAAGAAGTTGCTGCATTGTCAAAACTACCTCCTAGAGGTCCACCTCCAATGCCAGATTACCAGCTTCACCATGCTCACATAGACATGCCCATAGAACAAATCAACCGGCTGAAGAGAGAATTTCAACAAGTAACTGGAAGCAATTGTTCTGCTTTCGAGGTTGTAGCTGCAGGGTTTTGGAGCAGCAGAACAAAAGCCATTAATTTTGAGCCTAATACCCAATTGAAGCTTGTGTTCTTTGCAAATTGCCGTCAGTTATTGGACCCTCCTCTACCCAATGGTTTCTATGGTAATTGTTTCTTCCCAGTAACAATTACAGCTTCATGTGAGACACTTAGAAAGGCACAGATTGTTGATGTGGTGAAGCTGATCCAAGAAGCAAAGGCTAAGTTACCTATTGAGTTTGGAAAGTACTTGAAGGGAGAGCATTTGAAAGGTGATGGTGAGGACCCTTTTGCACCTCCACTTGCATATACCACACTGTTCATATCTGAGTGGGGGAGGCTGGGATTCAACCACGTGGACTACCAGTGGGGTCCACCAGTCCACGTGGTCCCTATTCAAGGGTCCAGTATTATACCAGTGGGCATTGTGGGGTCCATGCCTCTTCCAAATAAAGGGATTCGTTTGTTGACGTGGTGTGTGGAGGAGGCTCATCGAGTTCCCTTCCTTAATCACATGCATGGTGTCATGGATCAGCAATTGTTGTTATAA 1302 0.447 MAMSVMRTKQSLVKPAKETPSTTLDLSVIDRLPVLRCNARTLHVFKHGPEATSVIKEALSQALVPYYPLAGRLKESKPGCLQIECSGDGVWYVEASSDCTLDSVNFFDDVESIPYDHLLPDNIPDTEHIDPLVQMQVTQFGCGGFVTGLIFCHSICDGLGAAQFLNAIGEVARGIEKPSTEPVWNRDFFPSPQTPQEEVAALSKLPPRGPPPMPDYQLHHAHIDMPIEQINRLKREFQQVTGSNCSAFEVVAAGFWSSRTKAINFEPNTQLKLVFFANCRQLLDPPLPNGFYGNCFFPVTITASCETLRKAQIVDVVKLIQEAKAKLPIEFGKYLKGEHLKGDGEDPFAPPLAYTTLFISEWGRLGFNHVDYQWGPPVHVVPIQGSSIIPVGIVGSMPLPNKGIRLLTWCVEEAHRVPFLNHMHGVMDQQLLL. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05172 433 Pfam Transferase family 4 383 - -
Seca2g05172 433 Gene3D - 1 202 IPR023213 -
Seca2g05172 433 PANTHER ACYL TRANSFERASE 4 3 424 - -
Seca2g05172 433 Gene3D - 206 420 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05172 Seca-Chr2 138171183 138173350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05172 3 389 Monolignol Biosynthesis Gene Families AT5G48930 27.670 2.19e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05172 - - gmx:100783128 718.768