Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05171 ATGTTCCTTTTCCTTCTTTTGTTTTCTGCCATGGAAGATGAACCTTTTCTGGGGCTCGAACGTTGCGATTTACCCTTCACCTCTTCCAAGTCCTTCAACGATGTTGTCACTTTACAAGAAGCCCCACGATCACAAGTTTCAGAGATAGAATCCTGCACTGAACCCCACCGGAACACACCATTGCCTCCGAAGAAGAAACTCAGTCGCTGCAAAACCGCTCCTGCTATGGTTACCATGCGAGACCTCAAACCAAAGGTACCCCAAGTTCCCAAACCTCAATCTAGTTCCATCATCAGACAAGGCATTTGGTTGCTTCTCATATATCTCTCTGTGGGTGTCTTCATATACTCTTTCAACAGGGACCGTTTTTCTGGCATAGAGACTCACCCTGTTGTTGATGCCCTTTACTTTTGTATAGTTACCATGTGTACAATAGGTTATGGGGATATAGCTCCTTTAACCCCAATTACAAAGGTCTTTGCTTGTGTTTTTGTCTTGGTGGGGTTTGGATTTATAGATATACTCCTTAGTGGGCTTGTCAATTTTGTCTTAGATTTGCAGGAGAATTTGATCCTAACGGGTCTTCAAGTGGGTTCTAGAGAAGGTTTCTCTGCAAGGGATTATATAGTTGATGTGGCTAAGGGTAGGATGAGGATTAGATTGAAGGTTGGTTTGGCACTTGGGGTTGTGGTGCTTTGTATTGGGATTGGGAGTTTGGTATTGTACTTTGTGGAGGGTTTGGATTGGGTTGATTCCATTTACTTATCAGTTATGTCTGTCACAACTGTTGGGTATGGGGATAGAGCCTTCAAGACCCTTCCGGGTAGGTTATTTGCAGCTATTTGGCTTCTGTTTTCTACATTGATGGTGGCAAGGGCCTTCCTGTATCTGGCAGAGGCAAGAATTGATAGAAGGCATAGGAGAATGGCCAAGAAAGTGTTGCAAAGAGAAATAACTGTGGAGGATTTGATTGCTGCTGATATCAACCACACTGGTTTTATCAGGTAA 1008 0.4355 MFLFLLLFSAMEDEPFLGLERCDLPFTSSKSFNDVVTLQEAPRSQVSEIESCTEPHRNTPLPPKKKLSRCKTAPAMVTMRDLKPKVPQVPKPQSSSIIRQGIWLLLIYLSVGVFIYSFNRDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPITKVFACVFVLVGFGFIDILLSGLVNFVLDLQENLILTGLQVGSREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLQREITVEDLIAADINHTGFIR. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05171 335 SUPERFAMILY Voltage-gated potassium channels 213 319 - -
Seca2g05171 335 Pfam Ion channel 231 299 IPR013099 -
Seca2g05171 335 Pfam Ion channel 104 183 IPR013099 -
Seca2g05171 335 FunFam Two-pore potassium channel 3 206 320 - -
Seca2g05171 335 FunFam Two-pore potassium channel 5 86 196 - -
Seca2g05171 335 Gene3D - 208 326 - -
Seca2g05171 335 Gene3D - 76 191 - -
Seca2g05171 335 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 132 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca2g05171 335 SUPERFAMILY Voltage-gated potassium channels 94 183 - -
Seca2g05171 335 PRINTS Two pore domain K+ channel signature 140 168 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca2g05171 335 PRINTS Two pore domain K+ channel signature 261 270 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05171 Seca-Chr2 138162185 138164558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05171 47 334 Ion Channels AT4G01840 67.905 7.53e-138 395