Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05159 ATGGACGACTGCTGTGCTGTTTGCGCCGAGCCATTGGAATGGGTTGCATACGGACCCTGTTTGCACCGGGAGGTATGTTCCACCTGCGTCGCCCGCCTCCGTTTCATATGCGACGATCGCCGTTGCTGCATCTGCAAGACCGAGTGCAACCTCGTATTCGTTACCAAGGCTCTAGGGGATTATACAAGAATGATCAATGATTTTTCAGCCCTGCCAGTTGAGGTAAGGGAGGGCAAGGTTGGATCATACTGGTACCATGAGGATACAAACGCCTTTTTCGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAATGTATGTGACAAGATGGAGGAGCAACCACATGATGGTTCAAGGCGACGGCCGAGGTTTAGGAATATAGGACAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTATGTCTGGAGGGAAGGAAGGTATTTATATGTGAGCAAAAACTATACACTAGAGCACAGGTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAATGAACTATACACGCATATGTCTACAGAGCATTATACATGTCACATTTGCCAAAGGCAGCATCCAGGACAATATGAATACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTTTTATGTGAAGATGAGGCTTGTCTTGCCAAGAAATTTGTTGTGTTTCAATCTGAGTCAGAGATGAAGAGGCACAATGCTCTTGAACATGGAGGGCGAATGTCACGGTCAAAGCGCAACGCTGCTCTTCAGATACCGACTAGCTTCCGATACAGACATGGTAATGAGCAGGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATTTTTCTGAAAACCAACTTTCTATGGCCATTCAAGCCAGTTTGGAGATGGCTAATGCTGAGCAAACGTTTCATAATCCATCAACATCAAGTAATGGAGAAATTGCTGTTGATGATGGGGATGCTGATATTGATTCTATCATTCAGCCTTTTGAATCATTAGGTACAGCTGGTTCTGAGTCATCTTCAAGATACCTTCAAGCCTTAGGACATAGTTCTAAGAATGGACCTCTGGAAGATTCTTCCTTTCCTCCGCTTCCCATAGTTTCCGGCAATGGCCAGCAAAGGTCCAGACATGAGTTGGAAGGTTCATCTAGTAACACTATGGCAGCCCGTTTGCGCCGGCATGGCAACAGAAATGTATCTGTAATTAATTCTGGTATTGCCTGGTCTGTAGCGGGCCGTGGACCTGTACAATCATCAAGTAATTCTCCACAATCTAATATGTCTGCAAATCTTGCCCTTGGAGTGTCTCGTAATTCTGGTCAGATGAAGACAATTAACAATGGTCTTTCACAATCAACTTATGCTAGTTCTATTCAGGGTATGCATAGAACTGCTCATGGACAATTACCCGCTAGTTCATTGAGGGAAACACGCGACAGTGGTAGAATGGTTCACTCTGCATCTGCTCCAAACCTCATTGAGAGCAATCCTGTTGAAGTTTCAATTTCCGATTTTCCTCCAGTTTCTGCCACACAAGTGAGTAAGTTGCCTACAAGTAGCCAGTCTCTATTGAATGTGGAGAATGTTCAGTCTGCTAACAAGTCCTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGATAGATACTCTATATTTAAAGACATATCTGCTCAATATCGCCAAGGCACAATAGATACAGGTACATATGTGGAGTATGTGCAGCAGTTTGGTTTGTCACATCTTGTACTTGAGTTGGCAAGACTATGCCCGGATGTTCAGAAACAGAAAGAACTTGTCGAGTGCTACGCCAATTTGCAAAAAAATGCTTTACAGGAAAATAACTGGATTGGTGGTGGCACTAGCACTCATCGGAAGGCCAGTAATGCCAACAAGAAAGGGAAGGCTGTAGACGGTACGGGGAGTAACTCCACAGAGAGATTAGCAGATAGCTTTTTAAACACTGTACATTGGCTACAGTCAAATTATAAATCTTCAGAAGAGAATTCGGAGGTACTATCAAAGGGTGATTACCGCACTGAGAGAGGCAAATTAAAATTTGAGCAGCAGACTGGTACAAACTCTGGTAGTCAACCTAAGATGAAGGAAACATCAAATGGCAGCTTATCTAATCAAAATAGAGAGGATGGGGGTGGTGGGAATAAGCAACGCAAAAAATCTTCCAAGTTCCTCAGAGTGCGACTCGGTGATGGTTCTGCTTCGGCCCTTCTAGATCTTGAAAACTCGCGCGCCGAATCAGATCCTGGAACAACAGACAGTTTAGAAGGTAACAAGAATGACTCTGGAGGAGGGCTGCCTGTACCTGTACGAGGTGTTTGGCGAAATGGGGGAGGCCAGAAACTCTTTCCCTGA 2499 0.4466 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTRMINDFSALPVEVREGKVGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCNVCDKMEEQPHDGSRRRPRFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQVNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSESEMKRHNALEHGGRMSRSKRNAALQIPTSFRYRHGNEQEQRRGRGRTFRRDFSENQLSMAIQASLEMANAEQTFHNPSTSSNGEIAVDDGDADIDSIIQPFESLGTAGSESSSRYLQALGHSSKNGPLEDSSFPPLPIVSGNGQQRSRHELEGSSSNTMAARLRRHGNRNVSVINSGIAWSVAGRGPVQSSSNSPQSNMSANLALGVSRNSGQMKTINNGLSQSTYASSIQGMHRTAHGQLPASSLRETRDSGRMVHSASAPNLIESNPVEVSISDFPPVSATQVSKLPTSSQSLLNVENVQSANKSLVEKIRGALDFDEDRYSIFKDISAQYRQGTIDTGTYVEYVQQFGLSHLVLELARLCPDVQKQKELVECYANLQKNALQENNWIGGGTSTHRKASNANKKGKAVDGTGSNSTERLADSFLNTVHWLQSNYKSSEENSEVLSKGDYRTERGKLKFEQQTGTNSGSQPKMKETSNGSLSNQNREDGGGGNKQRKKSSKFLRVRLGDGSASALLDLENSRAESDPGTTDSLEGNKNDSGGGLPVPVRGVWRNGGGQKLFP. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05159 832 MobiDBLite consensus disorder prediction 793 807 - -
Seca2g05159 832 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Seca2g05159 832 SMART c2h2final6 220 250 IPR013087 -
Seca2g05159 832 SMART c2h2final6 251 280 IPR013087 -
Seca2g05159 832 SMART c2h2final6 196 219 IPR013087 -
Seca2g05159 832 SMART c2h2final6 108 144 IPR013087 -
Seca2g05159 832 MobiDBLite consensus disorder prediction 706 769 - -
Seca2g05159 832 MobiDBLite consensus disorder prediction 783 832 - -
Seca2g05159 832 MobiDBLite consensus disorder prediction 729 759 - -
Seca2g05159 832 CDD RING-HC_ZNF598 3 54 IPR041888 -
Seca2g05159 832 MobiDBLite consensus disorder prediction 659 686 - -
Seca2g05159 832 MobiDBLite consensus disorder prediction 389 425 - -
Seca2g05159 832 PANTHER ZINC FINGER PROTEIN 598 1 737 IPR044288 GO:0061630|GO:0072344
Seca2g05159 832 MobiDBLite consensus disorder prediction 406 425 - -
Seca2g05159 832 MobiDBLite consensus disorder prediction 712 728 - -
Seca2g05159 832 ProSiteProfiles Rhodanese domain profile. 422 458 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05159 Seca-Chr2 138070619 138075440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05159 1 827 C2H2 Transcription Factor Family AT3G62240 54.045 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05159 K22381 - gmx:100799878 1372.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05159 2 138070619 138075440 Seca2g05159 2 138070619 138075440 ECH