Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05145 ATGGACACTGAAAGTGTTCACATGATGAGAAGTTTATCAGGAGCATATGGAAGTGGAAGTGAAGAAGAGACGGAAATAACGAAAGGTCCATGGACAGAGGAGGAGGATTCTCTTCTCTTCAACTACATCACTGTCCACGGCGAAGGTCACTGGAATACCGTCGCTCGCTCTGCAGGTCTTAAGCGAACAGGGAAAAGCTGCAGGTTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGCAATATAACCCTTCAAGAACAGCTTTTGATTCTTGACCTCCATTCCCGTTGGGGCAATCGGTGGTCCAAAATAGCTCAACACTTACCGGGAAGAACAGATAACGAGATTAAAAATTATTGGAGGACGAGAGTGGTGAAGCAGGCTAAGCAACTCAAATGTGATGTTAACAGCAAACAGTTCAGAGACACTCTGCGTTTTGTATGGATGCCACGTATGCTAGAAAGGATCCAGGCTCAGGCCTCATCAGGGGATGGAACTCCTTGCCATAACCAACAACCCAACTTGTCAAACACTCAACAGCACAGTTTGTTATCAGAGGCCTCATCATCCGCCGTTGATGTCCATCAGGCTCCTTCTCTCTCTGACTCTAGTGCGTCTAATTACAGTTTAATGGATGGTAGTAATGGTAATACTAGCTGCTCTTCATATAGTGCAGAGGAAGGTACCCTATCACAGCAGAGAAACTACATGTACATGGACATCACAGGCAACTATTTCGGTGGTGCTGACTTATGGACGGATGAAAACATATTCTTCTTGCAACAGCAGCTAGCTGATGATATTTAG 813 0.4526 MDTESVHMMRSLSGAYGSGSEEETEITKGPWTEEEDSLLFNYITVHGEGHWNTVARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSGDGTPCHNQQPNLSNTQQHSLLSEASSSAVDVHQAPSLSDSSASNYSLMDGSNGNTSCSSYSAEEGTLSQQRNYMYMDITGNYFGGADLWTDENIFFLQQQLADDI. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05145 270 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Seca2g05145 270 Gene3D - 85 126 - -
Seca2g05145 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 75 IPR017930 -
Seca2g05145 270 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Seca2g05145 270 FunFam MYB transcription factor 85 148 - -
Seca2g05145 270 SMART sant 80 128 IPR001005 -
Seca2g05145 270 SMART sant 27 77 IPR001005 -
Seca2g05145 270 FunFam Myb transcription factor 28 80 - -
Seca2g05145 270 Gene3D - 27 80 - -
Seca2g05145 270 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Seca2g05145 270 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Seca2g05145 270 CDD SANT 85 124 IPR001005 -
Seca2g05145 270 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Seca2g05145 270 MobiDBLite consensus disorder prediction 161 190 - -
Seca2g05145 270 CDD SANT 30 75 IPR001005 -
Seca2g05145 270 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca2g05145 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Seca2g05145 270 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05145 Seca-Chr2 137900794 137901903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05145 21 269 MYB Transcription Factor Family AT2G47190 49.805 4.13e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g05145 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05145 K09422 - gmx:100819467 363.999