Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05134 ATGTTGGATTTGGTGTCGTCTTCTCTGGGCAAACTATCACCGTCAGGTTTCCTATTCTCCTTGCCTAGGGTTTTATTTTTAGTTCCCCTGCTAATGCGAATTGGTCTTGAGTTGACGAAGCTGGAGATTCAGAAAGAGCAAGCAGACCAAAGGGTCAATTTCAGCGGAGACCCAACGAACCCTCATCCCCATGGCTATGACCCCAACCACATCGATTCTGCCCCTCGCCCTCCCCGTAAACGACCCTGGCATCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGATGGTGGGGGTCATGTAAAAGTTTATGTTGCACCAGTTCCGAGAACTGCAACAGAGGCTGATATCTGCCCTGTTTTCGAAGGACATGGAACCATTGTTGAGGTTGTTCTTTTAAAGGATAAGAGAACTGGTGCTCGACAAGGAAGTTGTTTTGTGAAATATTCAACATTAAATGAAGCTGACAGGGCTATTAAGGCTTTAAACAATCAGTATACATTTCCTGGGGAATCATGTCCTGTTGTTGTCAGATTTGCTGATCGAGAACGTGAACGACTTGGTAATTATCCTTATGAATCTATTATTTAA 591 0.445 MLDLVSSSLGKLSPSGFLFSLPRVLFLVPLLMRIGLELTKLEIQKEQADQRVNFSGDPTNPHPHGYDPNHIDSAPRPPRKRPWHHSNQGTSPDQVDGGGHVKVYVAPVPRTATEADICPVFEGHGTIVEVVLLKDKRTGARQGSCFVKYSTLNEADRAIKALNNQYTFPGESCPVVVRFADRERERLGNYPYESII. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05134 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 182 IPR000504 GO:0003723
Seca2g05134 196 FunFam Flowering time control protein FCA isoform B 86 187 - -
Seca2g05134 196 SUPERFAMILY RNA-binding domain, RBD 76 187 IPR035979 GO:0003676
Seca2g05134 196 Coils Coil 31 51 - -
Seca2g05134 196 SMART rrm1_1 102 178 IPR000504 GO:0003723
Seca2g05134 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 170 IPR000504 GO:0003723
Seca2g05134 196 PANTHER TRANSFORMER-2-RELATED 81 166 - -
Seca2g05134 196 MobiDBLite consensus disorder prediction 52 100 - -
Seca2g05134 196 Gene3D - 94 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05134 Seca-Chr2 137790423 137792785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05134 88 186 Eukaryotic Initiation Factors Gene Family AT2G23350 30.392 7.94e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05134 - K13207 gmx:100776162 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05134 2 137790423 137792785 Seca2g05134 2 137790423 137792785 ECH