Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05132 ATGGAGAAGAAGAAGAAGGAGATGGAGGAAGCGATTAATGGATCTTCATTGTTCCCTGCAAGTGGGTATCCATTCCCGTTTGATTTCCCCGAAGAAAAGAACACTTTAGGGTTCATGGAGTTACTGGGTGTGCAGGACTACACTACTCCTCTGCTTGATTCACCTGATCTCAAAGAGTCTACTGTTTCTGAGGTGTTGAACCACCAACCTCCCACTCCTAACTCTTCCTCCATTTCATCTGCATCCAGTGATGAGTTACACAATCATAACAAAACTGTAAACCACCACCCGCAAAAACAATCTGATCGGATGGTTTTGTGGTTAAGGTTGAAGACTAAGAAGACAAATCAGAAGAGACAGAGAGAACCTAGATTCGCCTTCATGACGAAAAGCGAGGTGGATCATCTCGAAGATGGATACAGATGGAGAAAGTACGGTCAAAAAGCTGTCAAAAATAGCCCCTTCCCCAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTTAAGAAACGCGTGGAGCGATCTCTTACTGATCCAAGCTTTGTAGTCACAACTTATGAAGGCCAACACACACATCCAAGTCCACTTATGGGTCGCTCATCAGGATCTCCAATCGGTGTCTCCGCCACCAACTTCAACTTAGGTTCAGCAAACTACATATCCCAATATTATAATCAGCACCATCAACAAGTCCTTGTCAATACATTGTCCTCTTTGGGTTTCCCTCCTCCTTATACTCAAGAGAGACCGCTAGAGGCAACTGCTGCATTGCTAAGGGACCATGGCCTTCTTCAAGATGTTGTTCCTTCACATATCTATGTGGAAGGAAGACCACATGATAACTCCAACACTACTGCTTCTATGTGA 870 0.4437 MEKKKKEMEEAINGSSLFPASGYPFPFDFPEEKNTLGFMELLGVQDYTTPLLDSPDLKESTVSEVLNHQPPTPNSSSISSASSDELHNHNKTVNHHPQKQSDRMVLWLRLKTKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSLTDPSFVVTTYEGQHTHPSPLMGRSSGSPIGVSATNFNLGSANYISQYYNQHHQQVLVNTLSSLGFPPPYTQERPLEATAALLRDHGLLQDVVPSHIYVEGRPHDNSNTTASM. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05132 289 PIRSF WRKY_txn_fact_IIc 1 277 IPR017396 GO:0003700
Seca2g05132 289 SMART WRKY_cls 136 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05132 289 MobiDBLite consensus disorder prediction 60 87 - -
Seca2g05132 289 FunFam WRKY transcription factor 57 122 196 - -
Seca2g05132 289 SUPERFAMILY WRKY DNA-binding domain 128 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g05132 289 MobiDBLite consensus disorder prediction 60 102 - -
Seca2g05132 289 Pfam WRKY DNA -binding domain 137 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05132 289 Gene3D WRKY domain 121 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g05132 289 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 223 IPR044810 GO:0003700
Seca2g05132 289 ProSiteProfiles WRKY domain profile. 131 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05132 Seca-Chr2 137775743 137777224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05132 109 276 WRKY Transcription Factor Family AT2G47260 50.244 8.59e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g05132 WRKY 9.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05132 - - ccaj:109814750 300.056