Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05128 ATGTCGAAGAGGAAGTTCGGGTTCGATGGGTTTGGCATAAACCGCCAATCAACTTACAGTTTCGAGCGATCTCAAGCTCCTCAGCGACTCTACGTCCCTCCATCCTCGCGCCACGGCCATGACAATTACGAGGACACCGACCTCGATAACATCGAATACGACGACAACGATGGTTCTAAGGACGAAGGGGACAACAACAACAACAAGAAGGGCGGTGACGAGGACGACGAAATCGATCCCCTTGATGCATTCATGGAAGGGATTCACGAAGAGATGAGGGCGGCGCCGCCTCCGAAGCCGAAGGAGAAGGAAGAGGACAGGTACAAAGATGACGAAGAGGACGATCCCATGGAGAGTTTTTTGAGGGCGAAAAAGGACCTAGGGTTGACGCTGGCATCGGAGGCACTGCATGCTGGGTATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAGGCTGTGGACGCTGGTATGTTAGAGTATGATTCTGATGATAACCCTATTGTTGTTGACAAGAAGAAAATTGAGCCCATTCCTGCCCTGGATCACACTTCCATTGATTACGAGCCCTTCAATAAGGATTTTTATGAGGAGTCCCCTTCAATATCAGGTATGAGTGAGCAAGATGTAACTGAATACAGGAAGAGTTTGGCTATTCGCGTATCTGGTTTTGATGTTCCTAAGCCAATAAAAACATTTGAGGACTGTGGGTTTCCTGCACAAATTATGAATGCTATAAAAAAACAAGGTTATGAGAAGCCTACATCTATACAGTGCCAAGCTTTGCCGGTTGTGCTTTGTGGTAGAGATATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACAGCTGCTTTTGTGCTTCCTATGATTGTGCATATTATGGATCAGCCTGAACTTCAGAAGGATGAGGGTCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCACATCAGATATATCTGGAGTCCAAGAAATTTGCAAAGTCATATGGTTTACGTGTCTCTGCTGTCTACGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTTAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGATATGCTAAAAATGAAGGCATTAACAATGATGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGCCAAACTTTACTCTTTTCTGCAACAATGCCTCGAAGAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTGTTAGAGTAACGGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAATTGCCTTGGCTTCTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGAAATTGAATCACAATTGGCTCAGAGAGGCTTTAAAGTTGCTGCTCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGAAATTTTACAGAAGTTTAAATCTGGCATTTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAAACAGTGGTGAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGTATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGAGTTGCGTACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAATTGCTGCTGGTCAGAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGAAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGCGGGAGAAAAGGAAGAGGCAGGGGTGGAGGTGGCGGTGGGGGTGGCAGAGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCAGAGTCCAACAATGCACCATCTAACACAGTTCCAAGTCGATCTGCCACTGTAAATTCTCTGCGAACAGGGATGATGTCACAATTCAGGAGTAACTTTGTTGCTGCGTCATCAAACTCTCAAAATCAAGGATTCAGTAACAATGCAGGCATGACTGCTAATAAGAGACCAGCACTCGCTGGCTTTGTATCCGGTGGATCAATTGGTGGTGATATAAATGTTCACCAGCATACTGCTTCATCCAGTCCTGCTGCTACATCAGCTGTAAATTCCACTAGTCAAAGTTCTGGTGTAAATTCTGGTCAGAACAGCACAAACAGTTCTAAACCCAGAGAAAGGCGAAGGCCATCAGGTTGGGATAGATAG 2334 0.449 MSKRKFGFDGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDGSKDEGDNNNNKKGGDEDDEIDPLDAFMEGIHEEMRAAPPPKPKEKEEDRYKDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVVDKKKIEPIPALDHTSIDYEPFNKDFYEESPSISGMSEQDVTEYRKSLAIRVSGFDVPKPIKTFEDCGFPAQIMNAIKKQGYEKPTSIQCQALPVVLCGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKDEGPIGVICAPTRELAHQIYLESKKFAKSYGLRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRRVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMEILQKFKSGIYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGRGRGGGGGGGGRGVRGVDFGLGIGYNPESNNAPSNTVPSRSATVNSLRTGMMSQFRSNFVAASSNSQNQGFSNNAGMTANKRPALAGFVSGGSIGGDINVHQHTASSSPAATSAVNSTSQSSGVNSGQNSTNSSKPRERRRPSGWDR. 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05128 777 CDD SF2_C_DEAD 448 580 - -
Seca2g05128 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 461 610 IPR001650 -
Seca2g05128 777 MobiDBLite consensus disorder prediction 1 116 - -
Seca2g05128 777 MobiDBLite consensus disorder prediction 729 777 - -
Seca2g05128 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 439 IPR027417 -
Seca2g05128 777 SMART ultradead3 249 451 IPR014001 -
Seca2g05128 777 MobiDBLite consensus disorder prediction 615 643 - -
Seca2g05128 777 Gene3D - 193 437 IPR027417 -
Seca2g05128 777 MobiDBLite consensus disorder prediction 60 107 - -
Seca2g05128 777 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 382 390 IPR000629 -
Seca2g05128 777 MobiDBLite consensus disorder prediction 13 31 - -
Seca2g05128 777 Pfam Helicase conserved C-terminal domain 465 570 IPR001650 -
Seca2g05128 777 Gene3D - 438 614 IPR027417 -
Seca2g05128 777 SMART helicmild6 489 570 IPR001650 -
Seca2g05128 777 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 183 610 - -
Seca2g05128 777 CDD DEADc_DDX42 241 437 - -
Seca2g05128 777 FunFam probable ATP-dependent RNA helicase DDX17 192 439 - -
Seca2g05128 777 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 230 258 IPR014014 GO:0003724
Seca2g05128 777 Pfam DEAD/DEAH box helicase 254 425 IPR011545 GO:0003676|GO:0005524
Seca2g05128 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 608 IPR027417 -
Seca2g05128 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 436 IPR014001 -
Seca2g05128 777 MobiDBLite consensus disorder prediction 729 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05128 Seca-Chr2 137716068 137720326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05128 227 580 Eukaryotic Initiation Factors Gene Family AT3G19760 33.148 1.40e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05128 K12835 - gmx:100814854 1300.03