Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05123 ATGGACAGTAATGCCTCCCCCCAACTTGAGTCAGAAACATCTTCCGACCTCAAATCAGAAACTCAAGCATCCAAGAAACGGAAAATGGTTCAGAAAACAGTTGTGGCTGTGAAGATAGGAGAAAATGTTGGCAAGCTGAAGAATGAAGGGTTACCCTCTGATTTTTGGTCCTGGAGGAAATATGGACAAAAGCCAATCAAAGGGTCTCCATATCCAAGGGGTTATTATAGATGCAGCACATCAAAGGGATGTTCAGCCAAAAAGCAAGTTGAGAGATGCAGAACAGATGCTTCAATGCTAATCATCACCTATACCTCTACACATAACCATCCAAGTCCACCTGTTCTCTCCACAAATTCAGCCCAACAACCAAAAGAATCAGAAACTGAAACCACTGAAGATCTCACAGTTACCTCAAACGAAGAAGATCAAGAACAGATAGAAGAGGGAATGGATAATAAGCACACTATAACCAGTAGTTATCAAGGTACAAATGAAGAAAATTTTCATTACTTGCAATCCCCAATTCGCTGCTCCGAGGACATAATTATAGACCAAGAAGATCCTTTCAAATTAAACATTGAAAAAAGCCATGACAGAATAGATCTCCTGTTAGAGGAAGAGCCACTCTGTTATGCACAGTTGAAGAATTTGTCATCATCCAAATCAGAAGAACTTGACTTTTTCGATGAGCTTGAGGAGCTACCCATGTCTTCATCTTTCTTAAAATTTACGAGGAGCATTTTTTCCGATGAAAGGATTCCTGTTGCCCCTTCTTGA 780 0.4026 MDSNASPQLESETSSDLKSETQASKKRKMVQKTVVAVKIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPSPPVLSTNSAQQPKESETETTEDLTVTSNEEDQEQIEEGMDNKHTITSSYQGTNEENFHYLQSPIRCSEDIIIDQEDPFKLNIEKSHDRIDLLLEEEPLCYAQLKNLSSSKSEELDFFDELEELPMSSSFLKFTRSIFSDERIPVAPS. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05123 259 ProSiteProfiles WRKY domain profile. 47 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05123 259 Pfam WRKY DNA -binding domain 54 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05123 259 SUPERFAMILY WRKY DNA-binding domain 50 113 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g05123 259 Gene3D WRKY domain 37 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g05123 259 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g05123 259 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 240 IPR044810 GO:0003700
Seca2g05123 259 MobiDBLite consensus disorder prediction 106 148 - -
Seca2g05123 259 MobiDBLite consensus disorder prediction 106 126 - -
Seca2g05123 259 MobiDBLite consensus disorder prediction 1 30 - -
Seca2g05123 259 FunFam WRKY transcription factor 65 24 113 - -
Seca2g05123 259 SMART WRKY_cls 52 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05123 Seca-Chr2 137684852 137686159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05123 11 241 WRKY Transcription Factor Family AT4G01250 37.607 2.30e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g05123 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05123 - - gmx:100127368 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05123 2 137684852 137686159 Seca2g05123 2 137684852 137686159 ECH