Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05120 ATGGGTTATGGGTATGGCTCTGTAGAAGAGGTTCTGTTCCATGAGAAAAACACTTTCTCTGATATTTTAACAGAGAATGGAAAAGGAGCCATTATGTTAGAAGATCAAAATCAGCAGCAAGAACTCCAAGTTAATAACTTGATGTTAGAAGAGATCAACTTTGATCCTTATCTTCAACAAACACAACCTTCTCAGGAAACTACAGGGCTAAAGATTCATGGAGTGGTAAATTCAGAACCTGTTGAACACAGTATGCAGGTGCCAGTGCCACCCTCAGCTTTAACATCTTTAGAGCTCCTTAGAAATTATGGAAGCAGGTTCAAGAAGCTAAGTGGGCAAAACATAAACAACTCAAGCAATAATCTTGAAACTTCTCTGCATCACCAGAAGATGTCAACAGAAGAAATAATAAGAGTTGCTGGAGCAAGGTATGTTCAATATTCTGCTCATTGGAATGATAGTTTCTGCATCCCTATGCACCCTTATGGATTGGATCTTAGGGGTTTGTCTGATGAAGAAAATAGAGACGTTGAACTTGCTCAGTTTCTCCTTGCTGCAGCTGAGAAGGTTGGTTGCAAACAATTTGAACGTGCAAGCAAGTTACTTCTCCGTTGTCAATGGAATTCATCTCCCACTGGAAACACTGTTCAAAGGGTTGTCTTTCATTTTACTCAAGCACTTCGAGAGAGAATAGACAAAGAAACAGGAAGAGTGACACTAAAAGGATCAGAGAAAAATGAAGAAAGGGAATTGCTTCAAAAGATGGATACCAATAAGTCCCTACTTTGCCATCAAAAAATCCCTTTTAATCAAGTAATGCAATTCACTGGGATACAAACTATAGTGGAACATGTTGCATCTGAGACCAAAATTCATATGATAGATCTTGATATAAGAAGTGGGGTGCAGTGCACAGCTTTGATGCAAGCATTGGCTGAGCGCCAGAGTTGCAAAGTAGAGTTTTTGAAGGTAACTGCTATTGGATTTAATACATGCAAGACCAAGATAGAAGAAACAGGAAAAAGGTTAGTGAGTTTTGCTGAATCCTTAAACTTGCCCTTTTTATATAAGGTTGTTTTAGTCAGAGAAATGGCAGAAATTAAGGAAAATCAATTTGAAATTGAAGAGGATGAAGCTGTGGCTGTGTACTCTCCTTATTTTCTAAGGACTATGATAGCAAGGCCTGATTGTATGGAAAAAGTGATGTGGGTTATAAGAAATATTAGACCTTCTATAATGATAGTCCTTGAAATGGAAGCAAACCATAATTCACCCTCCTTTGTGAATCGCTTCATTGAAACATTGTTCTTCTACTCAGCTTTTTTTGATTGCCTTGAAACGTGCATAAAAGAGGATGATGAGTGCAGAATGATAACTGAAGCAATATTATCAGCAGGGATAAGAAACATTGTTGCTATGGAAGGCAAGGAAAGGACAGTTAGAAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTGGAAAGTGGATTTAGTGAGTCATCTTTGTATCAAGCTGAATTGGTTGCTAAACAGTTTGCTTTTGGGAAATTCTGCACTATGGACAAGAATGGTAAGTGTCTATTAGTGGGATGGAAGGGAACTCCAATGCATTCTATCTCTGCTTGGAGGTTTCTCTGA 1653 0.3829 MGYGYGSVEEVLFHEKNTFSDILTENGKGAIMLEDQNQQQELQVNNLMLEEINFDPYLQQTQPSQETTGLKIHGVVNSEPVEHSMQVPVPPSALTSLELLRNYGSRFKKLSGQNINNSSNNLETSLHHQKMSTEEIIRVAGARYVQYSAHWNDSFCIPMHPYGLDLRGLSDEENRDVELAQFLLAAAEKVGCKQFERASKLLLRCQWNSSPTGNTVQRVVFHFTQALRERIDKETGRVTLKGSEKNEERELLQKMDTNKSLLCHQKIPFNQVMQFTGIQTIVEHVASETKIHMIDLDIRSGVQCTALMQALAERQSCKVEFLKVTAIGFNTCKTKIEETGKRLVSFAESLNLPFLYKVVLVREMAEIKENQFEIEEDEAVAVYSPYFLRTMIARPDCMEKVMWVIRNIRPSIMIVLEMEANHNSPSFVNRFIETLFFYSAFFDCLETCIKEDDECRMITEAILSAGIRNIVAMEGKERTVRNVKIDVWRRFFARYRMVESGFSESSLYQAELVAKQFAFGKFCTMDKNGKCLLVGWKGTPMHSISAWRFL. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05120 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 125 541 IPR005202 -
Seca2g05120 550 Coils Coil 550 550 - -
Seca2g05120 550 Pfam GRAS domain family 180 548 IPR005202 -
Seca2g05120 550 ProSiteProfiles GRAS family profile. 170 548 IPR005202 -
Seca2g05120 550 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05120 Seca-Chr2 137668626 137670278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05120 171 549 GRAS Transcription Factor Family AT1G66350 30.526 5.97e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca2g05120 GRAS 1.6e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05120 - - gmx:100791952 783.867