Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05111 ATGATGACGCATATTGTGCGTCATGTGAACATGAATTCAGAAAATGTTCTCTCCCAATTTCAATCAGAAATCGAGCATTCAGCTAGACTGATACACCCTTTGAATTCGTCCACAACCAATTTTGCAAGATTTCTTAATTCAACTCTCAGTGCCACTGAAATCTCATTCTCTGATATTGAGACCAAGGTGGCTCCGTTGCTATTTCAAGCATATGAGACGGTTCCTCACTTGGACCAAATCTCATACATAGAAATGAACGGTCTCTTTTTCTCGTATTATACTGATCATGATGAAGTTATGGCAGTATACTCAAACTCATCATCACCATTGATTTCTCCTTGGGGTGCTTTAAATGCTAAAGTATACTATATCAAGCATGTAAATCGTGACACTGGAGAGTTATATGGTGATGCAATAAGGTCTGATTTTCAGCCATCTATTGGTGTAAGTTGGTCTAGTGAAACAATTAATAGTTCAAATGGGCATGCTTCATTGGGAACCAAATGGAACAATGGACATGATCTTCTATTCACTAGTTCAGCTAGAATCACAAACACAGGGGTGGTTTCTCTGGGTTTTCTAGCAACATCAATAGTTGATTTTTTCACTAGTGTTGGTCAACACCAAGGTGCAAGCTTGTATTTGGCCACCAAAGATGGAAAAGTGCTTCTAGAAGGGATCCAACATACTCATGTGCTCATTTATAATGAAACGGTTTCCTTCCAATCAGTGAATGCAAATAATAATCAGACAAGTTATGATGGTACTGTTTCATGCAAAGATGGAGTTGTTGCTTCAATTTTGACAATTCAAGATAGTGAGTATTTGATTCACTGCTCCCCCATTGATATAATGGGAGTAGAATCGGTGTATGTTTTGGCTGTCCCACAAAATGGAAATGCCCACTTTGTTCAGAGCATTAAGAAAAATGGATTGATGCTATTCACTATGATGATGGTTATGATATTCAGTGCCATAGCAAGTTTTCTATTTACAAATGCAAGATATGCAAGGAGAGAAATGCATTTGTGTGGGTCACTCATCAAACAAATGGAAGCAACCCAACAAGCTGAGCGAAAGAGTATGAATAAGAGCCTTGCTTTAGCAACTGCCAGCCATGATGTTCGCAATGCACTGGCAGGCCTAACTGGTTTGATAGAGATGTCAGATCAGGAAGTTGTTCATGGTTCAAAATTACACACCAACTTAAGACTCATGCATTCTTGTACCAAAGATTTACTAGGGCTCTTGAATTCTATACTTGATGCAAGCAAAATCGAAGCAGGCAAAATGCAGCTTGAGGAAGAGGAATTTGATATATTCCAATTCCTAGAAGATGTAGTTGATTTCTACCATCCTCTGGCTATGGAGAAAAGAGTAGATCTTATTTTGGACCTTTGCAATGGCTCCCTACTAAGATGTTCACGAGTGAAAGGTGACAGAGGAAAGCTTAAACAAGTTTTAAGCAATTTAGTGAACAATGCTGTTAAATTTACTAATGAGGGGCACATAGCAGTTCGAGCATGGGCTCAGAAGCCTACCTTGAAGAGTTCTAGAGTTGCTACTAATCGATACAGCTTCAAGAGACTTTTGTCACGCTTACTACATAGGAAAAATGAATCACATGATGATGTGGAAGCTGTGGATTTAATCCAACAGGATCCAAGTTGTATGGATTTTACGTTTGAAGTGGTTGATACAGGCATAGGAATTCCTAAAGAGAAGTACAAGTCTGTTTTTGAAAATTATGTCCAAGTTAAAGGAACTGCTCCTAGCCAACAACAACAAGGAACTGGCTTGGGACTTGGTATTGTCCAGTCATTGGTACGTTTGATGCATGGAGATATTGGAATTGTGGAGAAGGATGTTGGTGAAAAAGGAACCTGCTTTAGGTTCAATGTGCTTCTCACTGTATGTGAGACAGGGACTGGTGGTGGTAGAAGCATAATAAAGGGTCAATTTGGATCAACAATAAAGAGTCCCATGTTACCTGCTTATAGTCCTAGACCAGAGGTATCTGGAGTTGTTCTTTTGATTCAAGATGAGGAGCGCCAAAGGATTACTCAAAGGTTCATAGAGAGCTTATGGATCAAAGTTAAGGTTGTGAATGATTGGAGACACCTGCCTGAAACTCTCATGATGATCAAACAAAAAGGGTTTGATTCCAATAGTTTAAGTCCTCCAAGGTCTCCAGAGTTGAGTTTTATGTCTTTATCTCATGATAACTCTACTAGCAGAGGTAAAGGAGTCTCTTTGAGTGCTATGGATGGAACTGACTATATAAATTCATTCCATAGAGATATTGAAGCTACCCTTGGTTTCTTCCTGCTTGTGATTGATGCTACTCCAGAGCAAATTTCAGAACTTTCTTGGGTGGTATCTGACTTCAAAAGAGACCTTTCCAATCCTTATAGGGTTGTTTGGTTAGAGAATCCACTCATGAAGGATGGTGTTAATTCCAGAACCTTTGAAGAGTATCTTTCTAATTCAAATGACATTGTCTTATCCAAACCATTTCATGGTAGTCGATTACTCCAAGTTATAAGGCTTCTTCCAGAGTATGGTGGTGATTGGCAATGCAGTTCTAATGGAGGAAAGAGAGAAACTAGGTCTCATGTTTCCCCAACTGTTGAATATGGCAGTTCAAGTGGTTGTAAGGAAACACAGGAATCCTATGGACATCAATCTTATGATATGTCTAAAGCAGGAAAATCTGTGGTTCATGAAGGAGAAATAGAAGAATGTGAAGATACAAGCAATGGCAAACCCTTGAGTGATATGAAAATTCTGGTTGTTGATGACCAGGTAATATTACGAAGGATAGCTAAGGCTAATCTTGAATCACTTGGTGCTTCTATGGAGGAATGTGAGAATGGAGAACAAGCTGTGTGGCTAGTTAGAGAGGGTCTGAATCTCAAACCTCCATTTGATTGTATCTTAATGGACTGCCAGATGCCAGTAATGGGTGGATACGAGACAACAAGGCAGATAAGGGAGATGGAGAGGCCCTATGGTGTTCACATTCCTATCATTGCATTAACTGCAAATACAGGGGATGAAGCAAAATTGTCAATAGAAGCTGGAATGGATGGTCACTTGGAAAAACCCATCAACAAAGAGAAACTACTTGAAGCCATCAGTAACGTATGTAGTAAAGAGTGA 3162 0.3937 MMTHIVRHVNMNSENVLSQFQSEIEHSARLIHPLNSSTTNFARFLNSTLSATEISFSDIETKVAPLLFQAYETVPHLDQISYIEMNGLFFSYYTDHDEVMAVYSNSSSPLISPWGALNAKVYYIKHVNRDTGELYGDAIRSDFQPSIGVSWSSETINSSNGHASLGTKWNNGHDLLFTSSARITNTGVVSLGFLATSIVDFFTSVGQHQGASLYLATKDGKVLLEGIQHTHVLIYNETVSFQSVNANNNQTSYDGTVSCKDGVVASILTIQDSEYLIHCSPIDIMGVESVYVLAVPQNGNAHFVQSIKKNGLMLFTMMMVMIFSAIASFLFTNARYARREMHLCGSLIKQMEATQQAERKSMNKSLALATASHDVRNALAGLTGLIEMSDQEVVHGSKLHTNLRLMHSCTKDLLGLLNSILDASKIEAGKMQLEEEEFDIFQFLEDVVDFYHPLAMEKRVDLILDLCNGSLLRCSRVKGDRGKLKQVLSNLVNNAVKFTNEGHIAVRAWAQKPTLKSSRVATNRYSFKRLLSRLLHRKNESHDDVEAVDLIQQDPSCMDFTFEVVDTGIGIPKEKYKSVFENYVQVKGTAPSQQQQGTGLGLGIVQSLVRLMHGDIGIVEKDVGEKGTCFRFNVLLTVCETGTGGGRSIIKGQFGSTIKSPMLPAYSPRPEVSGVVLLIQDEERQRITQRFIESLWIKVKVVNDWRHLPETLMMIKQKGFDSNSLSPPRSPELSFMSLSHDNSTSRGKGVSLSAMDGTDYINSFHRDIEATLGFFLLVIDATPEQISELSWVVSDFKRDLSNPYRVVWLENPLMKDGVNSRTFEEYLSNSNDIVLSKPFHGSRLLQVIRLLPEYGGDWQCSSNGGKRETRSHVSPTVEYGSSSGCKETQESYGHQSYDMSKAGKSVVHEGEIEECEDTSNGKPLSDMKILVVDDQVILRRIAKANLESLGASMEECENGEQAVWLVREGLNLKPPFDCILMDCQMPVMGGYETTRQIREMERPYGVHIPIIALTANTGDEAKLSIEAGMDGHLEKPINKEKLLEAISNVCSKE. 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05111 1053 ProSiteProfiles Response regulatory domain profile. 928 1050 IPR001789 GO:0000160
Seca2g05111 1053 Gene3D - 431 642 IPR036890 -
Seca2g05111 1053 PRINTS Bacterial sensor protein C-terminal signature 596 614 IPR004358 GO:0016310|GO:0016772
Seca2g05111 1053 PRINTS Bacterial sensor protein C-terminal signature 560 574 IPR004358 GO:0016310|GO:0016772
Seca2g05111 1053 PRINTS Bacterial sensor protein C-terminal signature 578 588 IPR004358 GO:0016310|GO:0016772
Seca2g05111 1053 Gene3D - 350 430 - -
Seca2g05111 1053 SMART HisKA_10 363 429 IPR003661 GO:0000155|GO:0007165
Seca2g05111 1053 SMART REC_2 927 1046 IPR001789 GO:0000160
Seca2g05111 1053 CDD REC_hyHK_CKI1_RcsC-like 929 1046 - -
Seca2g05111 1053 ProSiteProfiles Histidine kinase domain profile. 370 638 IPR005467 -
Seca2g05111 1053 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 636 IPR003594 -
Seca2g05111 1053 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 351 431 IPR036097 GO:0000155|GO:0007165
Seca2g05111 1053 SMART HKATPase_4 479 638 IPR003594 -
Seca2g05111 1053 SUPERFAMILY CheY-like 923 1050 IPR011006 -
Seca2g05111 1053 Pfam Response regulator receiver domain 929 1046 IPR001789 GO:0000160
Seca2g05111 1053 MobiDBLite consensus disorder prediction 861 885 - -
Seca2g05111 1053 Gene3D - 906 1052 - -
Seca2g05111 1053 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 1047 - -
Seca2g05111 1053 MobiDBLite consensus disorder prediction 862 885 - -
Seca2g05111 1053 Pfam His Kinase A (phospho-acceptor) domain 365 429 IPR003661 GO:0000155|GO:0007165
Seca2g05111 1053 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 633 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05111 Seca-Chr2 137572828 137578159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05111 4 1039 Histidine Kinase Gene Family AT2G47430 37.400 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g05111 HATPase_c 2.2e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05111 - - gmx:100790376 1216.45