Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05108 ATGAAAGATATGGAAGAGGTTGTCTTGTTAGTCGATGATTTGAAGTTACTTTCTGGGGTTTCTCGCTGTAGAATATGCCATGAAGAAGAATTTGAGAGCTTGAAAAGCTTAGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCACATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAATCTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACTGCTCCTCCAAAGAAGTCTCAGATAAATGATGAAGCAATGTCCACTGGTGAGGAAGAAGCGTCAAACGGAAGAAGAGAAAGAGAAGGTATGGTGGAAGGAGTGGCAATGGAAAGTGATTACTCAGAATGCAGCTCTGCCGCTGACAAAAGCGCGTCTTGCTGTCGAACGCTAGCATTAGCTGTAAGCATATATTTGCTTAATCGATTTCATAATTCTTTTTAA 459 0.4074 MKDMEEVVLLVDDLKLLSGVSRCRICHEEEFESLKSLEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTAPPKKSQINDEAMSTGEEEASNGRREREGMVEGVAMESDYSECSSAADKSASCCRTLALAVSIYLLNRFHNSF. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05108 152 SMART ringv_2 22 71 IPR011016 GO:0008270
Seca2g05108 152 Pfam Protein of unknown function (DUF3675) 76 147 IPR022143 -
Seca2g05108 152 FunFam E3 ubiquitin-protein ligase MARCH4 12 80 - -
Seca2g05108 152 SUPERFAMILY RING/U-box 21 75 - -
Seca2g05108 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 80 IPR013083 -
Seca2g05108 152 MobiDBLite consensus disorder prediction 77 107 - -
Seca2g05108 152 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 21 145 IPR033275 -
Seca2g05108 152 CDD RING_CH-C4HC3_MARCH 23 70 - -
Seca2g05108 152 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
Seca2g05108 152 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05108 Seca-Chr2 137548488 137551425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05108 23 70 C3H Transcription Factor Family AT5G05830 40.385 1.66e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05108 - - gmx:100802379 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05108 2 137548488 137551425 Seca2g05108 2 137548488 137551425 ECH
Seca8g06673 8 161315693 161318173 Seca2g05108 2 137548488 137551425 PCT