Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05100 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAAGGGAGGTGGACAACAGAGGAAGATGAAATATTGACAAAGTACATTCAGGCCAATGGGGAAGGTTCTTGGAGGTCATTGCCAAAAAATGCAGGATTGCTGAGATGTGGGAAGAGCTGCAGATTAAGATGGATTAACTATTTAAGAGCTGATCTCAAAAGGGGAAATATTTCTGTTGAAGAGGAGAATATCATTGTAAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCTTTGATTGCAAGTCACTTGCCTGGCAGAACAGACAACGAGATAAAAAATCACTGGAACTCACACTTGAGTAGGAAAGTCTACCGCTTCAAAGGATCATCATCAGAAGGAATCATCGTAGATACCCCTCCCAAGCGCAAAGGTAGAACCAGCCGCTGGGCCATGAAGAAGAACAACAAAAACTACGCCAAAAAGGCTTCTTCTGATGATCACACTCCCACTCCCCAAGATAATAACGTGGAACCTGTTCCTGTTCCACCCACCACCCCTGCACTAGAGAGCGAGAACAACTTGTCTAGTTCTTTCTTGGTAGAGGGAGAAGATCAAAACGGAGGAGTATTGCAGTGTTTTGACGGTAAGAAAGAAGCTGACGGTGACGTGTCAGCTGGAGCGTGTCAGGAGGTTATTAATGGCGATGACATGCTCAATTTTGATGAATTCATGGACACATGCTTAGTGGAAGCAAGCCAGATTTTGAGCACCTTTTGCGAAAGCAATGATGTAGTAGCAATAAATGAAAATGAAAGAGGGGACACGTGTCATGCAACAAATAATGTGGCCCCGGAGAACCACAGCTCGAATGAGGAGTTGCAATATTGTTATTCTTGCTCTTCTAATTCCATGCCGCCTTGGGACTTCGATGATGATGATAGCAGCTGGGATTGGGAGAGCGTCTTGCAGTTGAATCAGTTAGAGTACTCATCGGAGCAACATGAAAAACTGCTCAATTGGCTGTGGGAAGATGATGATTGGGAAAACGAGTTTAAGATATTTGGAGGGATTGACCTAATTGAGACACAAAATCAAAATGAAATTATATGA 1089 0.4362 MGRAPCCEKVGLKKGRWTTEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEENIIVKLHASFGNRWSLIASHLPGRTDNEIKNHWNSHLSRKVYRFKGSSSEGIIVDTPPKRKGRTSRWAMKKNNKNYAKKASSDDHTPTPQDNNVEPVPVPPTTPALESENNLSSSFLVEGEDQNGGVLQCFDGKKEADGDVSAGACQEVINGDDMLNFDEFMDTCLVEASQILSTFCESNDVVAINENERGDTCHATNNVAPENHSSNEELQYCYSCSSNSMPPWDFDDDDSSWDWESVLQLNQLEYSSEQHEKLLNWLWEDDDWENEFKIFGGIDLIETQNQNEII. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05100 362 SMART sant 13 63 IPR001005 -
Seca2g05100 362 SMART sant 66 114 IPR001005 -
Seca2g05100 362 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca2g05100 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g05100 362 CDD SANT 16 61 IPR001005 -
Seca2g05100 362 MobiDBLite consensus disorder prediction 127 184 - -
Seca2g05100 362 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 182 - -
Seca2g05100 362 Gene3D - 11 67 - -
Seca2g05100 362 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca2g05100 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g05100 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca2g05100 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g05100 362 CDD SANT 71 112 IPR001005 -
Seca2g05100 362 Gene3D - 71 116 - -
Seca2g05100 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca2g05100 362 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05100 Seca-Chr2 137459589 137463368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05100 1 176 MYB Transcription Factor Family AT5G49330 58.824 5.25e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g05100 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05100 K09422 - gmx:100814275 317.39