Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05096 ATGTCAGATTATATTCATAGCTCAACACCAAAACTATTTGGTTTCCCACTAACAGAGCAGGAGGACAGGAAATTCAGGTGCCAATATTGCAAGCGAGTATTCACTAACTCCCAGGCCTTAGGGGGCCACCAAAATGCTCACAAGAAAGAACGCCAGAGAGCAAGGCGTTTCCAAATCCAGAATGACCATAGCCATAGCCAAAGGCGCTCCATACCCTCTGCACAAGTAACAGTTCTACCCTCAAGTATTTACTTACAAGGCTCTGCCTCTGCTGCCAATAATCATGTACCCACCTTTCATCCTCATCAACAATTGCTAAAGCACTTCCCATCAGGGCCCATTTTGATTCCTTCCTCAACTCCTTTTCAGCTTTATGTCTCACCCACTCAACTGCAATCTTCTCCGGAGAGGGATGTTGATGTCCATCTCAAATTGTCTCTCTCAAATTGA 450 0.4511 MSDYIHSSTPKLFGFPLTEQEDRKFRCQYCKRVFTNSQALGGHQNAHKKERQRARRFQIQNDHSHSQRRSIPSAQVTVLPSSIYLQGSASAANNHVPTFHPHQQLLKHFPSGPILIPSSTPFQLYVSPTQLQSSPERDVDVHLKLSLSN. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05096 149 MobiDBLite consensus disorder prediction 41 72 - -
Seca2g05096 149 PANTHER ZINC FINGER PROTEIN 5 21 148 IPR044299 GO:0010090
Seca2g05096 149 SUPERFAMILY beta-beta-alpha zinc fingers 21 52 IPR036236 -
Seca2g05096 149 Gene3D Classic Zinc Finger 15 80 - -
Seca2g05096 149 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Seca2g05096 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Seca2g05096 149 FunFam Zinc finger protein 6 15 82 - -
Seca2g05096 149 Pfam C2H2-type zinc finger 25 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05096 Seca-Chr2 137417296 137417778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05096 7 59 C2H2 Transcription Factor Family AT1G67030 49.296 1.62e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g05096 zf-C2H2_6 3.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05096 - - gmx:100806818 174.096