Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05086 ATGGCGACGAGAAATCGAACTCTACAGTTCAGGAACCACAGGGACGCTGTGAAGAGCGTACGTGCTCCTCTCTCTTCATCAGCATCTGCTTCCGGTGGTCCTGTCATTGAAATGGTGAACACTTCCCTTCTTCGCTCCAATAATCGATCTTCCTACACCCCTCTAAGCACCCACGATCCAGGTCCAGCCACCTCAAGCGATGCATTCACTGTGGGCTTGCCGCCATCTTGGGTGGATGATTCCGAAGAAATAGCTACAAACATACAACGTGCTAGGATTAAAATGTCTGAGTTAACCAAAGCTCATGCAAAGGCTTTAATGCCCTCCTTTGGTGATGGCAAAGATGATCAGCGTCAGATTGAGACTCTCACCCGGGAAATTACGGATCTCCTCAGAAAGTCTGAAGTGGGGCTGAAAAGACTTTCTGCTGCCAGTGGATCTTCTGAAGATTCTAATGTTAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAGAACCTGTCAATAGACCTCCGGCGAAAGCAGTCAGCATATTTGAAACATTTGCAGCAGCAAAAAGAGGGTTATGATGGAATCGACTTGGAGATGAACTTTAACGGGAGTAAATCTGGACTACAGGATGATGGATTCAGTGATGTGGGTTTTAGTGGAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGCTCTCAGAAGAAAGGGAAAGAGAGATTGATCAGGTTGCTAAATCAGTCAACGAACTTGCTCAGATCATGAAGGATCTCTCTGTTCTTGTGATAGATCAGGGAACAATTGTTGATAGAATTGACTACAACATTCAGAATGTTGCTACTTCCGTAGAAGAGGGTTTAAAGCAGTTGCAAAAGGTTCTGTTTTCTCTTACCCTCTTATTTACTAGCACAGAGACTTCACTTGGTCTTTACATGCAAATTGGAGCTTTTATCGATCTTTCTTTTGGAATTGTTTAA 969 0.4386 MATRNRTLQFRNHRDAVKSVRAPLSSSASASGGPVIEMVNTSLLRSNNRSSYTPLSTHDPGPATSSDAFTVGLPPSWVDDSEEIATNIQRARIKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITDLLRKSEVGLKRLSAASGSSEDSNVRKNVQRSLATDLQNLSIDLRRKQSAYLKHLQQQKEGYDGIDLEMNFNGSKSGLQDDGFSDVGFSGEQMTKLKKSEQLSEEREREIDQVAKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGLKQLQKVLFSLTLLFTSTETSLGLYMQIGAFIDLSFGIV. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05086 322 Gene3D - 74 282 - -
Seca2g05086 322 CDD SNARE_syntaxin16 232 289 - -
Seca2g05086 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Seca2g05086 322 SMART SynN_4 68 184 IPR006011 GO:0016020
Seca2g05086 322 Pfam SNARE domain 264 291 IPR000727 -
Seca2g05086 322 SUPERFAMILY t-snare proteins 73 283 IPR010989 GO:0016020|GO:0016192
Seca2g05086 322 PANTHER SYNTAXIN 79 289 IPR045242 -
Seca2g05086 322 FunFam Syntaxin-43 74 282 - -
Seca2g05086 322 ProSitePatterns Syntaxin / epimorphin family signature. 234 273 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca2g05086 322 SMART tSNARE_6 223 290 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05086 Seca-Chr2 137351434 137356130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05086 1 289 SNARE and Associated Proteins AT4G02195 69.072 8.14e-136 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05086 K08489 - gmx:100803629 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05086 2 137351434 137356130 Seca2g05086 2 137351434 137356130 ECH
Seca2g05086 2 137351434 137356130 Seca8g06468 8 159087225 159088667 ECH