Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05078 ATGTGTGGCGGTGCTATCATAGCTGAGTTCATACCCCGCAATCGCTCTCGCCGTCTCACCGCTTCAGAACTATGGCCTAATACATTTGGCAAACACAATAATGATTCACAGTTCGATTATTCCCAATCTCAGGAGCAAGAGGACCATCAAAAATCACTACCCCCTCTCAAAAGGTCCCAACTTTCCCCAGTGGACGAACAAGTTGAGAAGCCTGTGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATTAGGCAGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGTACTTTTAACACTGCTGAAGAAGCTGCAAGAGCTTATGACAGAGAAGCTAGAAAAATCCGTGGCAAAAAGGCCAAAGTGAATTTCCCAAATGAGAATGATCAATTCTCCATTCAACCTCGTTCTGTTCCTATTCCAACCCCTCCACTTCGACGCCAGGGTCTTCCTCCTCTGTATCAACAACAACAACCATATAGTTGCAATTTGAACCCTAAAAGTCTGAACTTGGAGTTCGGTTATGATCTGAATCAAGAAGGGTCATTTCCTTCTCATGGTGCTGGCATAAACGGGGATCCGGTTTTTGGTTCTGTGGATGAGAGTTGTGGATATGGATCTGCATCTGGGTCAGAGGGTGCTTATTCAACAACAGAGTTCATGAGTTCGAATAATTTTGGTGGTGAAGAGAAAGTGGTGAATGAGGAAGCACAAGGGGTTGGAAATGAAGAAACAAAGAACCAAGTGGAGAAGCTTTCGGAGGAGCTTATGGCTTATGAGAACTACATGAGGTTTTATCAGATTCCTTATTATGATGGCCAATCTGCTGCACCTAATACCACTGTTCAGGAAAGTGTGGTTGGAGATCTCTGGGCCTTTGATGCTGAGGCTGTTCCTTCTTCATCAACCCTGTGA 948 0.4546 MCGGAIIAEFIPRNRSRRLTASELWPNTFGKHNNDSQFDYSQSQEQEDHQKSLPPLKRSQLSPVDEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNENDQFSIQPRSVPIPTPPLRRQGLPPLYQQQQPYSCNLNPKSLNLEFGYDLNQEGSFPSHGAGINGDPVFGSVDESCGYGSASGSEGAYSTTEFMSSNNFGGEEKVVNEEAQGVGNEETKNQVEKLSEELMAYENYMRFYQIPYYDGQSAAPNTTVQESVVGDLWAFDAEAVPSSSTL. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05078 315 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Seca2g05078 315 Coils Coil 253 273 - -
Seca2g05078 315 MobiDBLite consensus disorder prediction 26 41 - -
Seca2g05078 315 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Seca2g05078 315 PANTHER DNA-BINDING DOMAIN 47 234 IPR044808 GO:0003700|GO:0009873
Seca2g05078 315 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Seca2g05078 315 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Seca2g05078 315 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Seca2g05078 315 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Seca2g05078 315 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Seca2g05078 315 MobiDBLite consensus disorder prediction 26 77 - -
Seca2g05078 315 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Seca2g05078 315 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05078 Seca-Chr2 137287438 137288486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05078 1 137 AP2-EREBP Transcription Factor Family AT3G16770 52.857 8.88e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g05078 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05078 K09286 - gmx:100780763 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05078 2 137287438 137288486 Seca2g05078 2 137287438 137288486 ECH