Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g05078 | ATGTGTGGCGGTGCTATCATAGCTGAGTTCATACCCCGCAATCGCTCTCGCCGTCTCACCGCTTCAGAACTATGGCCTAATACATTTGGCAAACACAATAATGATTCACAGTTCGATTATTCCCAATCTCAGGAGCAAGAGGACCATCAAAAATCACTACCCCCTCTCAAAAGGTCCCAACTTTCCCCAGTGGACGAACAAGTTGAGAAGCCTGTGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATTAGGCAGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGTACTTTTAACACTGCTGAAGAAGCTGCAAGAGCTTATGACAGAGAAGCTAGAAAAATCCGTGGCAAAAAGGCCAAAGTGAATTTCCCAAATGAGAATGATCAATTCTCCATTCAACCTCGTTCTGTTCCTATTCCAACCCCTCCACTTCGACGCCAGGGTCTTCCTCCTCTGTATCAACAACAACAACCATATAGTTGCAATTTGAACCCTAAAAGTCTGAACTTGGAGTTCGGTTATGATCTGAATCAAGAAGGGTCATTTCCTTCTCATGGTGCTGGCATAAACGGGGATCCGGTTTTTGGTTCTGTGGATGAGAGTTGTGGATATGGATCTGCATCTGGGTCAGAGGGTGCTTATTCAACAACAGAGTTCATGAGTTCGAATAATTTTGGTGGTGAAGAGAAAGTGGTGAATGAGGAAGCACAAGGGGTTGGAAATGAAGAAACAAAGAACCAAGTGGAGAAGCTTTCGGAGGAGCTTATGGCTTATGAGAACTACATGAGGTTTTATCAGATTCCTTATTATGATGGCCAATCTGCTGCACCTAATACCACTGTTCAGGAAAGTGTGGTTGGAGATCTCTGGGCCTTTGATGCTGAGGCTGTTCCTTCTTCATCAACCCTGTGA | 948 | 0.4546 | MCGGAIIAEFIPRNRSRRLTASELWPNTFGKHNNDSQFDYSQSQEQEDHQKSLPPLKRSQLSPVDEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNENDQFSIQPRSVPIPTPPLRRQGLPPLYQQQQPYSCNLNPKSLNLEFGYDLNQEGSFPSHGAGINGDPVFGSVDESCGYGSASGSEGAYSTTEFMSSNNFGGEEKVVNEEAQGVGNEETKNQVEKLSEELMAYENYMRFYQIPYYDGQSAAPNTTVQESVVGDLWAFDAEAVPSSSTL. | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g05078 | 315 | Gene3D | AP2/ERF domain | 79 | 137 | IPR036955 | GO:0003700|GO:0006355 | |
Seca2g05078 | 315 | Coils | Coil | 253 | 273 | - | - | |
Seca2g05078 | 315 | MobiDBLite | consensus disorder prediction | 26 | 41 | - | - | |
Seca2g05078 | 315 | Pfam | AP2 domain | 80 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g05078 | 315 | PANTHER | DNA-BINDING DOMAIN | 47 | 234 | IPR044808 | GO:0003700|GO:0009873 | |
Seca2g05078 | 315 | FunFam | Ethylene-responsive transcription factor 2 | 78 | 137 | - | - | |
Seca2g05078 | 315 | CDD | AP2 | 80 | 137 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g05078 | 315 | PRINTS | Ethylene responsive element binding protein signature | 80 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g05078 | 315 | PRINTS | Ethylene responsive element binding protein signature | 102 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g05078 | 315 | SMART | rav1_2 | 79 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g05078 | 315 | MobiDBLite | consensus disorder prediction | 26 | 77 | - | - | |
Seca2g05078 | 315 | SUPERFAMILY | DNA-binding domain | 79 | 137 | IPR016177 | GO:0003677 | |
Seca2g05078 | 315 | ProSiteProfiles | AP2/ERF domain profile. | 79 | 136 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g05078 | Seca-Chr2 | 137287438 | 137288486 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g05078 | 1 | 137 | AP2-EREBP Transcription Factor Family | AT3G16770 | 52.857 | 8.88e-43 | 146 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Seca2g05078 | AP2 | 9.5e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g05078 | K09286 | - | gmx:100780763 | 367.851 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g05078 | 2 | 137287438 | 137288486 | Seca2g05078 | 2 | 137287438 | 137288486 | ECH |