Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05066 ATGACCCTCAAGAACTTGTCCACACTCACCCTCTCTGTTCTCCTTTTACTTTCCATAGCTGAAAAGTACCATGCAGCAGCACCTATTGTTACCCCAAGAACCATTTGCAACTCCACCACAGACCCTTCCTTCTGCAAAACCGTTCTTTCTAACCAAAATAACGGCACCATATTTGACTATACCCGCATCTCTGTCCGAAAATCCCTGTCCCAATCCCGCAAATTCTTGAACTTACTCGATTCAATTCTTCAAGATAAATCATCTCTATCTCTATCTCAGCCCACAATTTTCGCCCTTGAAGACTGTCGATTCCTCATTGAACTAAACTTCGAATCCTTATCCAACATCCTTAACACTGTCGACAAAGCTAACAATGTTCTTCCCTCCTCACAAGCAGAAGATGAGCACACCCTGCTCAGTGCTGTTCTCACAAACCAACAAACTTGTTTAGATGGCATACAGTTCTCAGCTTCAGATCAAAGAGTGAAGAACGATCTTTCCTCCACACTCTCCAATGACACTAAGCTTCACGGTCTTTCCCTTTCCCTGTTCGTGAAAGGTTGGGTGCCAGAGAAGAAAATGGAAAAATCATGGCCAAAAAAGGGAAGACATTTGAGCTTCAAGAATGGTCGTTTACCGTTGAAGATGTCAAATCAAGCACGTGCTATTTATGATTCGGCTAGAGGCCATGGGAGAAAACTGCTTCAAACATTGGATGAAAGCGTGACGGTTATAGATGTTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTCACAACTATCAATGATGCTATAGCAGTTGCACCAAATAACACAGCTTCTGGTGTTGGTTACTTTCTAATTTTTGTCACTGAAGGTGTGTATCAAGAGTATGTGTCTATTCCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGAATCAATCGAACAATTATCACTGGTGATCACAATGTTGTTGATAATTACACAACATTCAATTCAGCAACATTTGCTGTGGTGGCAGAAGGATTCCTAGCAGTTAACATGACATTTCGCAACACTGCTGGGCCAAGCAAGCACCAAGCTGTTGCAGTAAGAAACGGGGCTGATTTGTCCACTTTCTATAGCTGTAGCTTTGAAGGGTATCAAGATACTTTATATACGCATTCTCTAAGGCAATTTTACCGTGAATGTGACATCTATGGTACGGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTTCAAAATTGTAACTTGTATCCTCGCCTACCTATGAGTGGACAATTCAATGCTATTACTGCTCAAGGTAGAACTGACCCAAATCAAAATACGGGTACTTCCATACATAATGCAACCATAAAAGCTGCTGATGATTTGGCTCCTATGGTTGGTACTGTGAAAACATACCTTGGGAGACCGTGGAAAGAGTATTCAAGGACGGTTTATATGCAATCTTTTATGGACAATTTGATAGATCCTGCTGGATGGCGTGAATGGAGTGGGGATTTTGCACTAAGCACATTGTACTATGCAGAGTATAATAATACGGGACCTGGTTCGGATACTACAAACAGAGTGAATTGGCTTGGCTATCATGTTATCAATGCAACTGATGCAGCCAATTTTACTGTGTCTAACTTCTTGGCTGGGGATAATTGGCTACCTCAAACTGGTGTCCCATACAATAATTCCCTCACAATATTCCTCATTCTATTTCTCCTACCATCCTTATTTGCCTCTACAGCTTTGGCAGACACCCCTCCCACTAACACCGTTTCTCCTGGAACCGCATGCAAATCCACCCCAGACCCAACTTATTGCAAGACCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTACGGCCGTTTCTCAGTCAAAAAGTCACTATCACAAGCCCGCAAGTTCTTGAACCTTGTCGATAAATATCTCCAACGCCGCTCAACTCTCTCCGCAACCGCCATCCGTGCTCTCCAAGATTGCCGAACGCTCGGCGAACTCAACTTCGATTTTCTCTCAAGTTCCTTCCAAACAGTGAACAAGACAACCAGATTCCTCCCTACTTTACAAGCTGACGACATCCAATCCCTCCTCAGTGCCATTCTAACCAACCAACAGACCTGTTTGGATGGCCTTAAAGACACCGCTTCCGCTTGGAGCGTTAGAAACGGACTCTCTATCCCACTCTCTAACGACACCAAACTCTACAGTGTCTCTCTTGCTCTCTTCACCAAAGGTTGGGTTCCCAGCACTAAAGTCAAGAAAGCCAATGCGTTGCACCCAACCAAACAACAACTTGGATTCCGAAACGGGCGTTTGCCACTCAAAATGTCAAGCAAAACCCGCGCGATCTACGAGTCTGTGAGTCGGAGAAAGCTCCTTCAGGCCACAGTTGGTGATGAGGTTGTGGTGAGAGACATCGTGACGGTGAGCCAAGATGGAACTGGAAACTTCACAACTATCAACGACGCCATTGCCGCAGCTCCAAACAAATCTGCCTCCACCGATGGTTACTTCCTCATCTATGTCACCGCCGGTGTATACGAAGAATATGTCTCCATTGATAAGAAAAAAACTTATCTCATGCTCGTTGGAGACGGTATCAACAAAACAATTATCACAGGCAATCGTAGCGTTGTCGATGGATGGACAACCTTCAGCTCCGCAACCTTGGCTGTGGTTGGGCAAGGATTTGTGGGTGTGAACATGACAATCCGTAACACCGCCGGGGCTGTGAAGCACCAAGCAGTGGCAGTTAGAAATGGAGCAGATTTGTCCACGTTTTACAGTTGCAGCTTTGAAGGGTACCAAGACACACTCTACACACATTCCTTGAGACAATTCTATAGGGAATGTGATATCTACGGAACGGTAGATTTCATATTCGGGAACGCTAAGGTTGTTTTCCAAAATTGCAACTTGTATCCTCGTCTCCCGATGAGTGGGCAATTCAACGCCATAACCGCACAAGGCCGAACCGACCCGAACCAAGACACGGGTACTTCGATCCATAACTGTACCATTAGAGCAGCGGATGATTTGGCTGCGAGCAATGGTGTGGCTGCAACGTATCTTGGAAGGCCATGGAAGGAGTATTCAAGGACGGTTTATATGCAAACTTTTATAGACAGTGTGGTGGATGGTGCTGGGTGGCGTGCATGGGATGGTGATTTTGCTTTGAGCACATTGTATTATGCTGAGTTTAATAACAATGGGCCAGGGTCTAGCACCGCTGGTAGAGTGACGTGGCCAGGGTACCATGTGATGAATGCCACGGATGCAGCTAACTTTACGGTGTCAAACTTCTTGCTTGGAGATGATTGGTTGCCACAGACAGGAGTGTCTTACACCAATACCTTGATATAG 3351 0.4491 MTLKNLSTLTLSVLLLLSIAEKYHAAAPIVTPRTICNSTTDPSFCKTVLSNQNNGTIFDYTRISVRKSLSQSRKFLNLLDSILQDKSSLSLSQPTIFALEDCRFLIELNFESLSNILNTVDKANNVLPSSQAEDEHTLLSAVLTNQQTCLDGIQFSASDQRVKNDLSSTLSNDTKLHGLSLSLFVKGWVPEKKMEKSWPKKGRHLSFKNGRLPLKMSNQARAIYDSARGHGRKLLQTLDESVTVIDVVVVSQDGSGNFTTINDAIAVAPNNTASGVGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVVDNYTTFNSATFAVVAEGFLAVNMTFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKAADDLAPMVGTVKTYLGRPWKEYSRTVYMQSFMDNLIDPAGWREWSGDFALSTLYYAEYNNTGPGSDTTNRVNWLGYHVINATDAANFTVSNFLAGDNWLPQTGVPYNNSLTIFLILFLLPSLFASTALADTPPTNTVSPGTACKSTPDPTYCKTVLPPQNGNVYDYGRFSVKKSLSQARKFLNLVDKYLQRRSTLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPTLQADDIQSLLSAILTNQQTCLDGLKDTASAWSVRNGLSIPLSNDTKLYSVSLALFTKGWVPSTKVKKANALHPTKQQLGFRNGRLPLKMSSKTRAIYESVSRRKLLQATVGDEVVVRDIVTVSQDGTGNFTTINDAIAAAPNKSASTDGYFLIYVTAGVYEEYVSIDKKKTYLMLVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIRAADDLAASNGVAATYLGRPWKEYSRTVYMQTFIDSVVDGAGWRAWDGDFALSTLYYAEFNNNGPGSSTAGRVTWPGYHVMNATDAANFTVSNFLLGDDWLPQTGVSYTNTLI. 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05066 1116 FunFam Pectinesterase 241 560 - -
Seca2g05066 1116 Pfam Plant invertase/pectin methylesterase inhibitor 33 166 IPR006501 GO:0004857
Seca2g05066 1116 Pfam Plant invertase/pectin methylesterase inhibitor 591 737 IPR006501 GO:0004857
Seca2g05066 1116 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 591 740 IPR035513 -
Seca2g05066 1116 ProSitePatterns Pectinesterase signature 2. 949 958 IPR033131 -
Seca2g05066 1116 SMART PMEI_2 27 183 IPR006501 GO:0004857
Seca2g05066 1116 SMART PMEI_2 584 737 IPR006501 GO:0004857
Seca2g05066 1116 CDD PMEI-like_3 34 184 - -
Seca2g05066 1116 FunFam Pectinesterase 590 740 - -
Seca2g05066 1116 FunFam Pectinesterase 796 1115 - -
Seca2g05066 1116 Pfam Pectinesterase 803 1101 IPR000070 GO:0030599|GO:0042545
Seca2g05066 1116 Pfam Pectinesterase 248 546 IPR000070 GO:0030599|GO:0042545
Seca2g05066 1116 Gene3D - 242 560 IPR012334 -
Seca2g05066 1116 Gene3D - 797 1115 IPR012334 -
Seca2g05066 1116 SUPERFAMILY Pectin lyase-like 247 557 IPR011050 -
Seca2g05066 1116 SUPERFAMILY Pectin lyase-like 799 1113 IPR011050 -
Seca2g05066 1116 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 186 IPR035513 -
Seca2g05066 1116 PANTHER PECTINESTERASE 20 550 - -
Seca2g05066 1116 CDD PMEI-like_3 591 742 - -
Seca2g05066 1116 FunFam Pectinesterase 33 186 - -
Seca2g05066 1116 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 184 IPR035513 -
Seca2g05066 1116 Gene3D Invertase/pectin methylesterase inhibitor family protein 590 740 IPR035513 -
Seca2g05066 1116 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Seca2g05066 1116 NCBIfam pectinesterase inhibitor domain 558 718 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05066 Seca-Chr2 137158782 137172671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05066 6 560 Carbohydrate Esterase AT4G02330 59.549 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05066 K01051 - gmx:100800971 989.178