Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca2g05065 | ATGGCTATGGATCCAGATATTGAAACAAAGTATGCGCAAAACACTAAGGTTATGATAGGCTCTGCAATCCTTCTCTTCTTAATTATACTTGTTGTTGCTTTATTTCGCACCTACGTCTACCTCTGCCGCCGGCGCCGGAGCCGGAGCGTTCTCTCCTCTCATTCGCTTCCCACAACAACCGCTTCCAAAGAAGAATGTCTTGATCCTTCCGTTCTCAAATCTCTTCCTATTTTCACTTACTCCTCCGCTACTCACCGCCACCTCCACGACTGCGCCGTCTGCTTGTCGGAGTTCGGCGACGGCGACGAATTCCGCGTGCTTCCAAACTGTAACCACGCTTTTCACTCCCATTGCATCGACGCTTGGTTTGCCTCTCACTCTAACTGTCCTCTCTGCCGAACCGCGGTACAACCGGCACCGGTTTCATCTGAATCTGAACCGTTCTCTGTTTCGGTTTCAGAATCTGAACCGGGTGAGGGTTGTTCGTCTTTTCCTGAACCGGTTGCGTGTCCGAGAAAGCCGTTGAGTATAATCGTGGAGCTGCCCCGAGAGGATAGAGGGTCGGATCCTGTACCCGGTGAAAACGGGTTCAAATGCTCCTTGAAGAGGCTTTGCAACGTGTAA | 624 | 0.5112 | MAMDPDIETKYAQNTKVMIGSAILLFLIILVVALFRTYVYLCRRRRSRSVLSSHSLPTTTASKEECLDPSVLKSLPIFTYSSATHRHLHDCAVCLSEFGDGDEFRVLPNCNHAFHSHCIDAWFASHSNCPLCRTAVQPAPVSSESEPFSVSVSESEPGEGCSSFPEPVACPRKPLSIIVELPREDRGSDPVPGENGFKCSLKRLCNV. | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca2g05065 | 207 | MobiDBLite | consensus disorder prediction | 146 | 165 | - | - | |
| Seca2g05065 | 207 | CDD | RING-H2_EL5-like | 90 | 133 | - | - | |
| Seca2g05065 | 207 | Pfam | Ring finger domain | 90 | 133 | IPR001841 | - | |
| Seca2g05065 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 133 | IPR001841 | - | |
| Seca2g05065 | 207 | FunFam | E3 ubiquitin-protein ligase ATL6 | 56 | 139 | - | - | |
| Seca2g05065 | 207 | SMART | ring_2 | 91 | 132 | IPR001841 | - | |
| Seca2g05065 | 207 | SUPERFAMILY | RING/U-box | 71 | 139 | - | - | |
| Seca2g05065 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 139 | IPR013083 | - | |
| Seca2g05065 | 207 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 13 | 155 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca2g05065 | Seca-Chr2 | 137155558 | 137156181 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca2g05065 | 11 | 137 | Rapid Response to Elicitors | AT3G16720 | 39.437 | 5.48e-30 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca2g05065 | - | - | gmx:102665377 | 240.736 |