Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05063 ATGGGAATCGATTTGAAGGCAGGAGGTAAGTCCAAGAAGACCAAGCGAACCGCCCCCAAATCTGGTGATATCTACCTCAAGCTCCTTGTCAAGCTTTACCGTTTTCTTGTTCGGAGGACTGAGAGTAATTTCAATGCCGTCATCCTCAAGCGTCTTTTCATGAGCAAAGCCAACAGGCCACCCCTATCCCTCTCTAGGTTAATTAGATTCATGAAGGGAAAGGTATCTATAATTTTTCTTTTTTAA 246 0.435 MGIDLKAGGKSKKTKRTAPKSGDIYLKLLVKLYRFLVRRTESNFNAVILKRLFMSKANRPPLSLSRLIRFMKGKVSIIFLF. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05063 81 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Seca2g05063 81 PANTHER 60S RIBOSOMAL PROTEIN L18 1 74 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca2g05063 81 SUPERFAMILY Ribosomal proteins L15p and L18e 21 77 IPR036227 -
Seca2g05063 81 Gene3D - 1 80 - -
Seca2g05063 81 Pfam Ribosomal protein 60S L18 and 50S L18e 2 74 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05063 Seca-Chr2 137136805 137138553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05063 3 74 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 80.556 7.18e-35 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05063 K02883 - cam:101492068 135.191