Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05061 ATGACAAAGTCTGAGCCCAAACGGGCCCATCTTCTAAGCCCAGATCGGTGGGAACCAATTATGAAAGCAAAGCGACTCAAAAACCCTAGTTTGGGGATCGATCTAAAGGCCGGAGGTAGGAGCAAAAAGACCAAAAGAACCGCACCCAAGTCCAATGATATCTATCTCAAGCTCTTGGTCAAGGCCTCCACTATCCTTGTGTGCGAGCAAATGGCCTCCGCTGCTCCTGGTGTGCAACACAGCCACACCAAGCCTTGTGTGCGAGCAAATGGAAGGAAGATCGAGAGGGCTCGAGGAAAGAGGAACGACCGTGGATTTAGAGTTTGA 327 0.5076 MTKSEPKRAHLLSPDRWEPIMKAKRLKNPSLGIDLKAGGRSKKTKRTAPKSNDIYLKLLVKASTILVCEQMASAAPGVQHSHTKPCVRANGRKIERARGKRNDRGFRV. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05061 108 PANTHER 60S RIBOSOMAL PROTEIN L18 73 108 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca2g05061 108 Pfam Ribosomal protein 60S L18 and 50S L18e 73 108 IPR021131 -
Seca2g05061 108 Gene3D - 31 68 - -
Seca2g05061 108 Gene3D - 69 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05061 Seca-Chr2 137125650 137127757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05061 75 108 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 73.529 1.08e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05061 K02883 - aof:109844080 63.929