Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05058 ATGGGCAAGGTTAACAGGCCTCCACTATCCTTGTCAAGATTGATTAGGTTTATGAAGGGGAAGGAAGGTGAGACTGTTGTGGTGGTGGGGACTGTAACTGATGATATACGTGTTTATGAAGTTCCAACCTTGAAAGTTACAACACTCAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGTTCTTACTCCTGGTGTGCCACACAACAACACCAAGCCTTATGTGCGAGCAAATGGAAGGAAGTTCGAGAGAGCTAGTTAA 267 0.4532 MGKVNRPPLSLSRLIRFMKGKEGETVVVVGTVTDDIRVYEVPTLKVTTLRGPKNAREAVKHFVLTPGVPHNNTKPYVRANGRKFERAS. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05058 88 PANTHER 60S RIBOSOMAL PROTEIN L18 1 50 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca2g05058 88 Pfam Ribosomal protein 60S L18 and 50S L18e 1 50 IPR021131 -
Seca2g05058 88 MobiDBLite consensus disorder prediction 68 88 - -
Seca2g05058 88 Gene3D - 1 48 - -
Seca2g05058 88 Gene3D - 49 88 - -
Seca2g05058 88 SUPERFAMILY Ribosomal proteins L15p and L18e 3 61 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05058 Seca-Chr2 137115359 137116114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05058 1 87 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 48.780 4.65e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05058 K02883 - twl:120003383 118.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05058 2 137115359 137116114 Seca2g05058 2 137115359 137116114 ECH