Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05057 ATGACAAAGGGGATCGATCTAAAGGCCGGAGGTAGGAGCAAAAAGACCAAAAGAACCGCACCCAAGTCCAATGATATCTATCTCAAGCTCTTGGTCAAGGCCTCCACTATCCTTGTGTGCGAGCAAATGGCCTCCGCTGCTCCTGGTGTGCAACACAGCCACACCAAGCCTTGTGTGCGAGCAAATGGAAGGAAGATCGAGAGGGCTCGAGGAAAGAGGAACGACCGTGGATTTAGAGTTTGA 243 0.5144 MTKGIDLKAGGRSKKTKRTAPKSNDIYLKLLVKASTILVCEQMASAAPGVQHSHTKPCVRANGRKIERARGKRNDRGFRV. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05057 80 Gene3D - 3 41 - -
Seca2g05057 80 Pfam Ribosomal protein 60S L18 and 50S L18e 45 80 IPR021131 -
Seca2g05057 80 MobiDBLite consensus disorder prediction 8 22 - -
Seca2g05057 80 Gene3D - 42 80 - -
Seca2g05057 80 PANTHER 60S RIBOSOMAL PROTEIN L18 45 80 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca2g05057 80 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05057 Seca-Chr2 137111269 137113376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05057 47 80 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 73.529 2.46e-12 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05057 K02883 - qsu:112016228 62.7734